Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LBA42_RS04490 Genome accession   NZ_CP145437
Coordinates   890644..891375 (-) Length   243 a.a.
NCBI ID   WP_000889925.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 885644..896375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS04460 (LBA42_04460) blpC 886193..886348 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  LBA42_RS04465 (LBA42_04465) - 886390..887730 (-) 1341 WP_001017638.1 sensor histidine kinase -
  LBA42_RS04470 (LBA42_04470) comE/blpR 887744..888481 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  LBA42_RS04475 (LBA42_04475) - 888486..888824 (-) 339 WP_000682135.1 LytTR family DNA-binding domain-containing protein -
  LBA42_RS04480 (LBA42_04480) - 889101..889430 (+) 330 WP_000132572.1 hypothetical protein -
  LBA42_RS04485 (LBA42_04485) - 889598..890647 (-) 1050 WP_000653767.1 ABC transporter permease -
  LBA42_RS04490 (LBA42_04490) pptA 890644..891375 (-) 732 WP_000889925.1 ABC transporter ATP-binding protein Regulator
  LBA42_RS04495 (LBA42_04495) - 891443..891853 (+) 411 WP_001278299.1 HIT family protein -
  LBA42_RS04500 (LBA42_04500) - 891863..892150 (+) 288 WP_000777760.1 hypothetical protein -
  LBA42_RS04505 (LBA42_04505) - 892312..892551 (+) 240 WP_001810235.1 hypothetical protein -
  LBA42_RS04510 (LBA42_04510) dnaJ 892885..894021 (-) 1137 WP_001810236.1 molecular chaperone DnaJ -
  LBA42_RS04515 (LBA42_04515) - 894423..894779 (-) 357 WP_000114433.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26992.50 Da        Isoelectric Point: 4.7792

>NTDB_id=938692 LBA42_RS04490 WP_000889925.1 890644..891375(-) (pptA) [Streptococcus pneumoniae strain HAC 39-1996]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMLRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=938692 LBA42_RS04490 WP_000889925.1 890644..891375(-) (pptA) [Streptococcus pneumoniae strain HAC 39-1996]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGCTCCGTCTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704