Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   VP418_RS14100 Genome accession   NZ_CP145430
Coordinates   2920009..2920482 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain A20AB02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2915009..2925482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP418_RS14085 (VP418_14085) pilX 2917638..2918456 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VP418_RS14090 (VP418_14090) pilW 2918453..2919454 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  VP418_RS14095 (VP418_14095) pilV 2919455..2920015 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  VP418_RS14100 (VP418_14100) fimU 2920009..2920482 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  VP418_RS14105 (VP418_14105) ispH 2920652..2921602 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VP418_RS14110 (VP418_14110) gmk 2921725..2922354 (+) 630 WP_000015937.1 guanylate kinase -
  VP418_RS14115 (VP418_14115) rpoZ 2922427..2922705 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  VP418_RS14120 (VP418_14120) - 2922744..2922873 (+) 130 Protein_2763 hypothetical protein -
  VP418_RS14125 (VP418_14125) - 2922913..2925018 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=938647 VP418_RS14100 WP_001214061.1 2920009..2920482(-) (fimU) [Acinetobacter baumannii strain A20AB02]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=938647 VP418_RS14100 WP_001214061.1 2920009..2920482(-) (fimU) [Acinetobacter baumannii strain A20AB02]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987