Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   VP418_RS14085 Genome accession   NZ_CP145430
Coordinates   2917638..2918456 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A20AB02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2912638..2923456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP418_RS14070 (VP418_14070) pilE 2912855..2913280 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  VP418_RS14075 (VP418_14075) pilY2 2913277..2913759 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  VP418_RS14080 (VP418_14080) pilY1 2913772..2917626 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  VP418_RS14085 (VP418_14085) pilX 2917638..2918456 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VP418_RS14090 (VP418_14090) pilW 2918453..2919454 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  VP418_RS14095 (VP418_14095) pilV 2919455..2920015 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  VP418_RS14100 (VP418_14100) fimU 2920009..2920482 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  VP418_RS14105 (VP418_14105) ispH 2920652..2921602 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VP418_RS14110 (VP418_14110) gmk 2921725..2922354 (+) 630 WP_000015937.1 guanylate kinase -
  VP418_RS14115 (VP418_14115) rpoZ 2922427..2922705 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  VP418_RS14120 (VP418_14120) - 2922744..2922873 (+) 130 Protein_2763 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=938644 VP418_RS14085 WP_000149374.1 2917638..2918456(-) (pilX) [Acinetobacter baumannii strain A20AB02]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=938644 VP418_RS14085 WP_000149374.1 2917638..2918456(-) (pilX) [Acinetobacter baumannii strain A20AB02]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993