Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D5261_RS22335 Genome accession   NZ_AP025739
Coordinates   5213401..5214798 (-) Length   465 a.a.
NCBI ID   WP_119321951.1    Uniprot ID   A0A402CX92
Organism   Capsulimonas corticalis strain AX-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5208401..5219798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5261_RS22320 (CCAX7_44160) - 5208802..5210805 (-) 2004 WP_119321955.1 ATP-dependent DNA helicase -
  D5261_RS22325 (CCAX7_44170) - 5210976..5211386 (+) 411 WP_119321954.1 hypothetical protein -
  D5261_RS22330 (CCAX7_44180) - 5211401..5213404 (-) 2004 WP_218025617.1 hypothetical protein -
  D5261_RS22335 (CCAX7_44190) radA 5213401..5214798 (-) 1398 WP_119321951.1 DNA repair protein RadA Machinery gene
  D5261_RS22340 (CCAX7_44200) - 5214960..5215673 (+) 714 WP_165864262.1 C4-type zinc ribbon domain-containing protein -
  D5261_RS22345 (CCAX7_44210) - 5215677..5217338 (+) 1662 WP_119321949.1 ATP-binding protein -
  D5261_RS22350 (CCAX7_44220) dut 5217319..5217825 (+) 507 WP_119321948.1 dUTP diphosphatase -
  D5261_RS22355 (CCAX7_44230) - 5217803..5218846 (+) 1044 WP_119321947.1 tetratricopeptide repeat protein -
  D5261_RS22360 (CCAX7_44240) - 5218989..5219612 (+) 624 WP_301002565.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49161.30 Da        Isoelectric Point: 7.2151

>NTDB_id=93847 D5261_RS22335 WP_119321951.1 5213401..5214798(-) (radA) [Capsulimonas corticalis strain AX-7]
MAKGIQTRHVCRECGYETPKWLGKCPGCDQWGTLEESITITPSKTAISRSNGAASLGLVTRAQPTRLTDVPSVALEGRMS
AGLSEFDRVLGGGIVPGALILVGGDPGIGKSTLLTQAAGFLAASGGTVLYVSGEESATQIKLRAERLGVASPNILLHNEV
DVTLIASTIASERPSVVIIDSIQTMQHPEVDSAAGSVSQVRSCTAMLAQAAKGHGIPIFLVGHVTKEGALAGPRVLEHMV
DTVLTFEGDRHYAYRVLRAVKNRFGSTDELGLFEMREEGLAQVANPSEMFLSERSERVTGSCVSPIVEGTRPLLVEVQAL
VAPSYLASPRRTFSGVDTNRVNLILAVLEKRAGLGLAKYDVFVNVAGGVRVDEPSADLAIAVATASNFREIAVNEHTVVA
GEVGLGGEVRAVGHMEQRLREAGRMGFKRAIVSARSLAGLSRARLGIEVIGVDNVHQAIEKAFRS

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=93847 D5261_RS22335 WP_119321951.1 5213401..5214798(-) (radA) [Capsulimonas corticalis strain AX-7]
ATGGCGAAGGGAATTCAAACGCGGCACGTCTGCCGCGAGTGCGGCTACGAAACGCCGAAGTGGCTGGGCAAGTGTCCGGG
GTGCGACCAGTGGGGAACGCTCGAAGAATCCATCACGATCACTCCGTCCAAGACGGCGATCTCTCGGTCGAACGGCGCGG
CGTCGCTGGGATTGGTGACGCGCGCGCAGCCGACGCGTTTGACCGATGTTCCGAGCGTCGCCCTGGAAGGCCGCATGTCG
GCGGGTCTTTCGGAGTTTGACCGGGTGCTCGGCGGCGGCATCGTGCCGGGCGCGCTGATCCTGGTCGGCGGCGATCCGGG
CATCGGCAAAAGCACGCTGCTGACGCAGGCGGCGGGCTTTCTGGCGGCGAGCGGCGGGACCGTGCTGTATGTCTCGGGCG
AAGAATCGGCGACGCAGATCAAGCTGCGCGCCGAGCGCCTGGGCGTCGCTTCCCCCAATATTTTGCTCCACAACGAAGTG
GATGTGACGCTGATCGCCTCGACAATCGCGTCGGAGCGGCCCTCCGTTGTGATCATCGACAGTATCCAGACGATGCAGCA
CCCCGAAGTCGATTCGGCGGCGGGCAGCGTTTCACAGGTGCGCTCCTGCACGGCGATGCTGGCGCAGGCCGCCAAGGGTC
ACGGCATCCCGATCTTTCTGGTGGGCCATGTGACGAAAGAAGGCGCGCTCGCGGGTCCGCGCGTCCTGGAGCATATGGTC
GATACGGTCCTGACCTTTGAAGGCGACCGGCACTACGCCTACCGCGTGCTGCGCGCCGTGAAGAACCGATTTGGCTCCAC
AGATGAGCTTGGGCTGTTCGAAATGCGCGAGGAGGGCCTGGCGCAGGTCGCCAACCCGAGTGAGATGTTTCTCTCCGAGC
GCAGCGAGCGCGTCACGGGATCGTGCGTTTCTCCCATCGTCGAGGGAACACGCCCTCTCTTAGTCGAAGTTCAGGCGCTG
GTGGCGCCGTCATACCTCGCCAGCCCGCGCCGGACATTTTCAGGCGTGGACACAAACCGCGTGAATTTGATTTTGGCGGT
CCTGGAAAAGCGCGCCGGACTGGGGCTCGCCAAGTACGATGTGTTTGTCAATGTCGCCGGCGGCGTGCGTGTGGATGAAC
CCTCGGCGGACCTGGCGATCGCGGTCGCCACGGCGTCAAACTTTCGAGAAATCGCCGTCAACGAACATACGGTCGTCGCC
GGCGAAGTCGGCCTCGGCGGCGAAGTGCGCGCCGTCGGCCATATGGAGCAGCGTCTGCGCGAAGCCGGACGCATGGGCTT
CAAACGCGCGATCGTTTCGGCTCGTTCTCTTGCCGGCCTTTCCCGCGCGCGGCTCGGCATTGAAGTGATCGGCGTGGACA
ATGTCCATCAAGCGATTGAAAAGGCGTTCCGATCGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-228)

Subunit ChlI of Mg-chelatase (ChlI)

(352-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A402CX92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.564

99.57

0.533
  radA Streptococcus pneumoniae Rx1

50.54

99.57

0.503
  radA Streptococcus pneumoniae D39

50.54

99.57

0.503
  radA Streptococcus pneumoniae R6

50.54

99.57

0.503
  radA Streptococcus pneumoniae TIGR4

50.54

99.57

0.503
  radA Streptococcus mitis NCTC 12261

50.54

99.57

0.503
  radA Streptococcus mitis SK321

50.54

99.57

0.503

Multiple sequence alignment