Detailed information NTG0938416

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SNR28_RS23430
• Genome accession: NZ_CP145311
• Coordinates: 2988279..2989148 (+)
• Length: 289 a.a.
• NCBI ID: WP_375751290.1
• Uniprot ID: -
• Organism: Vibrio sp. HN007
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2983279..2994148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SNR28_RS23410 (SNR28_23385)	nadC	2983786..2984673 (+)	888	WP_375751286.1	carboxylating nicotinate-nucleotide diphosphorylase	-
SNR28_RS23415 (SNR28_23390)	-	2984888..2985340 (+)	453	WP_375751287.1	pilin	-
SNR28_RS23420 (SNR28_23395)	pilB	2985340..2987025 (+)	1686	WP_375751288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SNR28_RS23425 (SNR28_23400)	-	2986988..2988244 (+)	1257	WP_375751289.1	type II secretion system F family protein	-
SNR28_RS23430 (SNR28_23405)	pilD	2988279..2989148 (+)	870	WP_375751290.1	prepilin peptidase	Machinery gene
SNR28_RS23435 (SNR28_23410)	coaE	2989150..2989758 (+)	609	WP_375751291.1	dephospho-CoA kinase	-
SNR28_RS23440 (SNR28_23415)	zapD	2989804..2990544 (+)	741	WP_375751292.1	cell division protein ZapD	-
SNR28_RS23445 (SNR28_23420)	yaaA	2990603..2991376 (-)	774	WP_375751294.1	peroxide stress protein YaaA	-
SNR28_RS23450 (SNR28_23425)	-	2991495..2992913 (-)	1419	WP_375754158.1	alanine/glycine:cation symporter family protein	-
SNR28_RS23455 (SNR28_23430)	-	2993223..2993408 (+)	186	WP_375751295.1	DUF3545 family protein	-
SNR28_RS23460 (SNR28_23435)	-	2993467..2994033 (-)	567	WP_375751296.1	hemerythrin domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32451.91 Da
• Isoelectric Point: 7.0204

>NTDB_id=938416 SNR28_RS23430 WP_375751290.1 2988279..2989148(+) (pilD) [Vibrio sp. HN007]
MELLYIYPWLFPVLASILGLIVGSFLNVVIHRLPIMMEREWKQDCAETFPELNIPVEEGTFNLSKPRSRCPKCNTPIRAI
DNIPVLSWLMLRGKCHKCSTSISIRYPLIEILTAVMCLTVALVMGFNYFAVAALFFTFVLISATFIDFDTMLLPDQLTLP
LMWGGIALSLIGWSPVSLEDAIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIIVLLSSFVGL
FFGIIQLRMQKKGIDKSFPFGPYLAIAGWIALLWGVDITNWYFTNILGI

Nucleotide

• Length: 870 bp

>NTDB_id=938416 SNR28_RS23430 WP_375751290.1 2988279..2989148(+) (pilD) [Vibrio sp. HN007]
ATGGAATTGTTGTATATCTACCCTTGGCTTTTTCCTGTATTAGCGTCTATTTTGGGTTTAATCGTTGGAAGCTTTCTGAA
CGTAGTTATCCATCGTCTCCCGATCATGATGGAGCGAGAGTGGAAACAAGACTGTGCGGAAACATTTCCAGAGCTAAATA
TACCTGTGGAAGAAGGGACGTTTAACCTCAGTAAGCCACGCTCCCGTTGCCCAAAATGCAACACGCCTATCAGGGCAATC
GACAACATTCCGGTTCTTAGTTGGCTGATGCTGCGGGGAAAATGCCACAAATGCTCTACCTCAATTAGCATTCGCTATCC
ACTAATAGAAATACTCACTGCCGTGATGTGTCTGACGGTGGCATTAGTCATGGGATTCAACTACTTCGCTGTAGCCGCAC
TTTTCTTCACTTTTGTACTGATAAGCGCCACTTTCATCGACTTCGATACGATGTTATTGCCAGATCAGCTTACTCTGCCT
TTGATGTGGGGTGGAATCGCATTATCTCTGATTGGTTGGAGCCCTGTTTCGTTGGAAGATGCGATCATAGGTGCGATGGC
TGGTTATCTCTGCTTATGGTCAGTTTACTGGTTATTTAAGTTGCTGACAGGTAAAGAAGGGATGGGTTATGGTGACTTCA
AGTTACTCGCAGCTTTAGGGGCATGGCTAGGTTGGCAAGCTCTACCAATCATCGTACTTCTTTCGTCATTTGTTGGTCTG
TTCTTCGGCATAATACAGCTAAGAATGCAAAAGAAAGGCATAGATAAGTCCTTTCCATTTGGCCCTTATCTGGCAATAGC
TGGGTGGATTGCTCTGCTTTGGGGTGTAGATATCACCAACTGGTATTTCACGAACATTCTGGGGATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Vibrio campbellii strain DS40M4	71.626	100	0.716
pilD	Neisseria gonorrhoeae MS11	50.345	100	0.505
pilD	Acinetobacter nosocomialis M2	51.292	93.772	0.481
pilD	Acinetobacter baumannii D1279779	51.292	93.772	0.481