Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   SNR28_RS23380 Genome accession   NZ_CP145311
Coordinates   2975414..2976019 (+) Length   201 a.a.
NCBI ID   WP_375751278.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970414..2981019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS23360 (SNR28_23335) - 2970901..2971818 (-) 918 WP_375751272.1 ABC transporter ATP-binding protein -
  SNR28_RS23365 (SNR28_23340) - 2971906..2973552 (-) 1647 WP_375751273.1 SulP family inorganic anion transporter -
  SNR28_RS23370 (SNR28_23345) can 2973782..2974441 (+) 660 WP_375751274.1 carbonate dehydratase -
  SNR28_RS23375 (SNR28_23350) hpt 2974502..2975032 (-) 531 WP_375751276.1 hypoxanthine phosphoribosyltransferase -
  SNR28_RS23380 (SNR28_23355) opaR 2975414..2976019 (+) 606 WP_375751278.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  SNR28_RS23385 (SNR28_23360) lpdA 2976095..2977519 (-) 1425 WP_375751280.1 dihydrolipoyl dehydrogenase -
  SNR28_RS23390 (SNR28_23365) aceF 2977728..2979317 (-) 1590 WP_375751282.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23350.83 Da        Isoelectric Point: 6.6006

>NTDB_id=938414 SNR28_RS23380 WP_375751278.1 2975414..2976019(+) (opaR) [Vibrio sp. HN007]
MDMIKKRPRTRLSPQKRKLQLMDIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLHHVVRQFSGFLN
ETIDTSLHSKQNLENITSQIIELVHQDCHWLKVWFEWSASTREEVWPLFVSLNKNSSMLLESMFQKAIDQGEICESQNPT
YLAKMLHGLCYSVYVQANRDQNEQELKDMVQGFLSMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=938414 SNR28_RS23380 WP_375751278.1 2975414..2976019(+) (opaR) [Vibrio sp. HN007]
ATGGATATGATTAAAAAAAGACCTAGAACCCGTCTGTCTCCACAAAAGCGTAAATTACAACTTATGGATATTGCGCTTGA
AGTATTTGCACGCAGAGGTATTGGTCGAGGCGGACATGCTGATATCGCAGAAATCGCTCAGGTTTCAGTCGCGACAGTAT
TTAACTACTTCCCTACTCGCGAAGATTTGGTTGATGAAGTTCTTCACCATGTTGTTCGCCAGTTCTCTGGTTTCTTGAAT
GAAACTATTGATACTTCCCTTCATTCGAAGCAGAACCTGGAAAACATTACTTCTCAAATTATTGAACTAGTGCATCAAGA
CTGCCACTGGCTAAAAGTTTGGTTTGAATGGAGTGCTTCTACTCGTGAAGAAGTTTGGCCTCTGTTTGTCTCACTAAACA
AAAACAGTTCTATGCTGCTGGAAAGTATGTTCCAGAAAGCCATTGATCAAGGTGAGATCTGCGAAAGTCAGAATCCTACT
TACCTGGCGAAAATGCTGCACGGCCTTTGCTACTCTGTATACGTTCAGGCAAACCGCGATCAAAACGAACAAGAACTGAA
AGATATGGTTCAAGGTTTCTTAAGCATGCTTTGTATTTACAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

70.149

100

0.701
  hapR Vibrio cholerae C6706

62.626

98.507

0.617
  hapR Vibrio cholerae strain A1552

62.626

98.507

0.617