Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C74_RS07680 Genome accession   NZ_CP145263
Coordinates   1536176..1537048 (-) Length   290 a.a.
NCBI ID   WP_002453082.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain DSM 20326     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1531176..1542048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C74_RS07665 (V6C74_07655) xerC 1531462..1532352 (-) 891 WP_002453085.1 tyrosine recombinase XerC -
  V6C74_RS07670 (V6C74_07660) trmFO 1532590..1533897 (-) 1308 WP_002453084.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C74_RS07675 (V6C74_07665) topA 1533923..1535998 (-) 2076 WP_029625697.1 type I DNA topoisomerase -
  V6C74_RS07680 (V6C74_07670) dprA 1536176..1537048 (-) 873 WP_002453082.1 DNA-processing protein DprA Machinery gene
  V6C74_RS07685 (V6C74_07675) sucD 1537537..1538445 (-) 909 WP_002453081.1 succinate--CoA ligase subunit alpha -
  V6C74_RS07690 (V6C74_07680) sucC 1538467..1539633 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C74_RS07695 (V6C74_07685) - 1539741..1540511 (-) 771 WP_002453080.1 ribonuclease HII -
  V6C74_RS07700 (V6C74_07690) ylqF 1540513..1541379 (-) 867 WP_002453079.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33453.46 Da        Isoelectric Point: 9.1538

>NTDB_id=938387 V6C74_RS07680 WP_002453082.1 1536176..1537048(-) (dprA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MIQHILLKLYWANFTTTQIHQFIKDYPEVISESPPTQKEMIEDWTIRQTTSTLKKKFNLFKSLDTEVLLQEMSKKNLKFL
TYFDKNYPQLLKEIYDFPYIIFYKGNKQLFNYPHTLAVIGSRKSTSYTTQALEYLFPSFKQLKMTIISGLAYGADSVAHQ
VALKNQLPTIGVLGFGHSYHYPKSTFKTRESVEREGLVISEYPPHSPISRYKFPERNRLISGLARGLLITEAEEISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYNF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=938387 V6C74_RS07680 WP_002453082.1 1536176..1537048(-) (dprA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
GTGATCCAACATATTTTATTGAAGCTCTATTGGGCTAATTTCACCACCACTCAAATTCATCAATTCATTAAAGATTACCC
TGAAGTTATATCAGAAAGCCCTCCAACTCAAAAAGAAATGATTGAAGATTGGACTATAAGACAAACCACCTCCACATTGA
AGAAAAAATTCAACTTATTTAAATCACTTGATACAGAAGTTCTACTTCAAGAAATGTCAAAAAAGAACCTCAAATTTTTA
ACTTACTTTGATAAAAATTATCCTCAATTACTTAAAGAAATTTATGATTTTCCATATATAATATTTTACAAAGGAAATAA
ACAACTATTTAACTATCCGCATACTTTAGCTGTTATAGGATCAAGAAAGTCCACTTCATATACCACACAAGCATTAGAAT
ATCTATTTCCCTCATTTAAACAACTAAAAATGACGATTATATCAGGATTAGCATACGGTGCAGATAGTGTAGCTCATCAA
GTTGCACTAAAAAATCAACTGCCAACAATAGGAGTTCTTGGTTTTGGACATTCATATCATTATCCTAAATCAACTTTTAA
AACAAGAGAGAGTGTCGAACGAGAAGGGCTCGTTATAAGTGAGTATCCGCCGCATTCTCCTATATCCAGATATAAATTTC
CAGAAAGAAATAGATTGATTAGTGGTCTCGCTCGAGGTTTATTAATTACAGAAGCAGAGGAAATAAGTGGTAGTCAAATA
ACAGTAGATTGCGCTTTAGAACAAAATCGAAATGTATATGTTTTACCAGGATCAATGTTCAATCCTATGACCAAAAGTAA
TTTACTTAGGCTTCAAGAGGGTGCACAAGTAGTTTTAGATGAAAGTAGTATCCTTTCGGACTACAATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

58.681

99.31

0.583
  dprA Staphylococcus aureus MW2

58.681

99.31

0.583