Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C74_RS06270 | Genome accession | NZ_CP145263 |
| Coordinates | 1237041..1238015 (+) | Length | 324 a.a. |
| NCBI ID | WP_103175541.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. capitis strain DSM 20326 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1232041..1243015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C74_RS06235 (V6C74_06225) | rpmG | 1232554..1232703 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C74_RS06240 (V6C74_06230) | - | 1232852..1233403 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C74_RS06245 (V6C74_06235) | - | 1233404..1234867 (+) | 1464 | WP_016898190.1 | rhomboid family intramembrane serine protease | - |
| V6C74_RS06250 (V6C74_06240) | - | 1234848..1235051 (+) | 204 | WP_103175540.1 | YqgQ family protein | - |
| V6C74_RS06255 (V6C74_06245) | - | 1235048..1236034 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| V6C74_RS06260 (V6C74_06250) | - | 1236034..1236360 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C74_RS06265 (V6C74_06255) | - | 1236360..1236983 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| V6C74_RS06270 (V6C74_06260) | comGA | 1237041..1238015 (+) | 975 | WP_103175541.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C74_RS06275 (V6C74_06265) | comGB | 1237987..1239056 (+) | 1070 | Protein_1169 | competence type IV pilus assembly protein ComGB | - |
| V6C74_RS06280 (V6C74_06270) | comGC | 1239075..1239386 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C74_RS06285 (V6C74_06275) | comGD | 1239376..1239813 (+) | 438 | WP_016898188.1 | competence type IV pilus minor pilin ComGD | - |
| V6C74_RS06290 (V6C74_06280) | - | 1239800..1240099 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| V6C74_RS06295 (V6C74_06285) | - | 1240017..1240421 (+) | 405 | WP_229716900.1 | ComGF family competence protein | - |
| V6C74_RS06300 (V6C74_06290) | - | 1240678..1241187 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C74_RS06305 (V6C74_06295) | gcvT | 1241396..1242487 (+) | 1092 | WP_016898186.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37099.89 Da Isoelectric Point: 7.5012
>NTDB_id=938381 V6C74_RS06270 WP_103175541.1 1237041..1238015(+) (comGA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTHELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTHELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938381 V6C74_RS06270 WP_103175541.1 1237041..1238015(+) (comGA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCATGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCATGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.279 |
99.691 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.279 |
99.691 |
0.701 |