Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V6C80_RS08760 Genome accession   NZ_CP145258
Coordinates   1835844..1836419 (-) Length   191 a.a.
NCBI ID   WP_002433165.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain DSM 6717     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830844..1841419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C80_RS08735 (V6C80_08730) - 1831329..1833233 (+) 1905 WP_047796046.1 class I SAM-dependent DNA methyltransferase -
  V6C80_RS08740 (V6C80_08735) - 1833217..1834221 (+) 1005 WP_047796045.1 restriction endonuclease subunit S -
  V6C80_RS08745 (V6C80_08740) - 1834276..1835337 (+) 1062 WP_053035554.1 tyrosine-type recombinase/integrase -
  V6C80_RS08760 (V6C80_08755) comK/comK1 1835844..1836419 (-) 576 WP_002433165.1 competence protein ComK Regulator
  V6C80_RS08765 (V6C80_08760) - 1836639..1836857 (+) 219 WP_030065132.1 IDEAL domain-containing protein -
  V6C80_RS08770 (V6C80_08765) - 1836938..1837924 (-) 987 WP_047796044.1 lipoate--protein ligase -
  V6C80_RS08775 (V6C80_08770) - 1838129..1838314 (+) 186 WP_002433441.1 DUF2187 family protein -
  V6C80_RS08780 (V6C80_08775) - 1838320..1838922 (+) 603 WP_002433304.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  V6C80_RS08785 (V6C80_08780) - 1839018..1840526 (-) 1509 WP_047796043.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22695.79 Da        Isoelectric Point: 9.5768

>NTDB_id=938354 V6C80_RS08760 WP_002433165.1 1835844..1836419(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=938354 V6C80_RS08760 WP_002433165.1 1835844..1836419(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAGAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAGCATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCATTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.596

98.429

0.754
  comK/comK1 Staphylococcus aureus N315

76.596

98.429

0.754