Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACET1K_RS27035 Genome accession   NZ_CP169026
Coordinates   5356522..5357514 (-) Length   330 a.a.
NCBI ID   WP_072164909.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5351522..5362514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1K_RS27025 (ACET1K_27015) yieP 5354414..5355106 (+) 693 WP_032345090.1 FadR/GntR family transcriptional regulator -
  ACET1K_RS27030 (ACET1K_27020) mdtD 5355129..5356556 (+) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  ACET1K_RS27035 (ACET1K_27025) cytR 5356522..5357514 (-) 993 WP_072164909.1 ribose operon transcriptional repressor RbsR Regulator
  ACET1K_RS27040 (ACET1K_27030) rbsK 5357518..5358447 (-) 930 WP_001300603.1 ribokinase -
  ACET1K_RS27045 (ACET1K_27035) rbsB 5358573..5359463 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACET1K_RS27050 (ACET1K_27040) rbsC 5359488..5360453 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACET1K_RS27055 (ACET1K_27045) rbsA 5360458..5361963 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  ACET1K_RS27060 (ACET1K_27050) rbsD 5361971..5362390 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36639.96 Da        Isoelectric Point: 5.2141

>NTDB_id=938285 ACET1K_RS27035 WP_072164909.1 5356522..5357514(-) (cytR) [Escherichia coli strain UTME-2]
MATMKDVARLVGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=938285 ACET1K_RS27035 WP_072164909.1 5356522..5357514(-) (cytR) [Escherichia coli strain UTME-2]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGTGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361