Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C94_RS06625 | Genome accession | NZ_CP145253 |
| Coordinates | 1357248..1358222 (+) | Length | 324 a.a. |
| NCBI ID | WP_023350200.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1191106 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1352248..1363222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C94_RS06590 (V6C94_06595) | rpmG | 1352761..1352910 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C94_RS06595 (V6C94_06600) | - | 1353059..1353610 (+) | 552 | WP_030063896.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C94_RS06600 (V6C94_06605) | - | 1353611..1355074 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6C94_RS06605 (V6C94_06610) | - | 1355055..1355258 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C94_RS06610 (V6C94_06615) | - | 1355255..1356241 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| V6C94_RS06615 (V6C94_06620) | - | 1356241..1356567 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C94_RS06620 (V6C94_06625) | - | 1356567..1357190 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| V6C94_RS06625 (V6C94_06630) | comGA | 1357248..1358222 (+) | 975 | WP_023350200.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C94_RS06630 (V6C94_06635) | comGB | 1358194..1359261 (+) | 1068 | WP_023350201.1 | competence type IV pilus assembly protein ComGB | - |
| V6C94_RS06635 (V6C94_06640) | comGC | 1359280..1359591 (+) | 312 | WP_367122033.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C94_RS06640 (V6C94_06645) | comGD | 1359572..1360018 (+) | 447 | WP_226859643.1 | competence type IV pilus minor pilin ComGD | - |
| V6C94_RS06645 (V6C94_06650) | - | 1360005..1360304 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| V6C94_RS06650 (V6C94_06655) | comGF | 1360222..1360713 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C94_RS06655 (V6C94_06660) | - | 1360883..1361392 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C94_RS06660 (V6C94_06665) | gcvT | 1361601..1362692 (+) | 1092 | WP_023350205.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37044.84 Da Isoelectric Point: 7.7305
>NTDB_id=938278 V6C94_RS06625 WP_023350200.1 1357248..1358222(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1191106]
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938278 V6C94_RS06625 WP_023350200.1 1357248..1358222(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1191106]
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.898 |
99.691 |
0.707 |
| comGA | Staphylococcus aureus N315 |
70.898 |
99.691 |
0.707 |