Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C79_RS06425 | Genome accession | NZ_CP145251 |
| Coordinates | 1325115..1326089 (+) | Length | 324 a.a. |
| NCBI ID | WP_023350200.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365665 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1320115..1331089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C79_RS06390 (V6C79_06370) | rpmG | 1320628..1320777 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C79_RS06395 (V6C79_06375) | - | 1320926..1321477 (+) | 552 | WP_030063896.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C79_RS06400 (V6C79_06380) | - | 1321478..1322941 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6C79_RS06405 (V6C79_06385) | - | 1322922..1323125 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C79_RS06410 (V6C79_06390) | - | 1323122..1324108 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| V6C79_RS06415 (V6C79_06395) | - | 1324108..1324434 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C79_RS06420 (V6C79_06400) | - | 1324434..1325057 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| V6C79_RS06425 (V6C79_06405) | comGA | 1325115..1326089 (+) | 975 | WP_023350200.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C79_RS06430 (V6C79_06410) | comGB | 1326061..1327128 (+) | 1068 | WP_367122040.1 | competence type IV pilus assembly protein ComGB | - |
| V6C79_RS06435 (V6C79_06415) | comGC | 1327147..1327458 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C79_RS06440 (V6C79_06420) | comGD | 1327436..1327885 (+) | 450 | WP_023350202.1 | competence type IV pilus minor pilin ComGD | - |
| V6C79_RS06445 (V6C79_06425) | - | 1327872..1328171 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| V6C79_RS06450 (V6C79_06430) | comGF | 1328089..1328580 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C79_RS06455 (V6C79_06435) | - | 1328750..1329259 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C79_RS06460 (V6C79_06440) | gcvT | 1329468..1330559 (+) | 1092 | WP_023350205.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37044.84 Da Isoelectric Point: 7.7305
>NTDB_id=938243 V6C79_RS06425 WP_023350200.1 1325115..1326089(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365665]
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938243 V6C79_RS06425 WP_023350200.1 1325115..1326089(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365665]
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.898 |
99.691 |
0.707 |
| comGA | Staphylococcus aureus N315 |
70.898 |
99.691 |
0.707 |