Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V6C47_RS08480 Genome accession   NZ_CP145248
Coordinates   1772795..1773370 (-) Length   191 a.a.
NCBI ID   WP_367120895.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365669     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767795..1778370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C47_RS08445 (V6C47_08455) - 1768714..1768848 (-) 135 WP_002469996.1 gallidermin family lantibiotic -
  V6C47_RS08450 (V6C47_08460) - 1769388..1769981 (+) 594 WP_367120892.1 hypothetical protein -
  V6C47_RS08455 (V6C47_08465) - 1770705..1771175 (-) 471 WP_411393648.1 hypothetical protein -
  V6C47_RS08460 (V6C47_08470) - 1771621..1771809 (-) 189 WP_367120894.1 hypothetical protein -
  V6C47_RS08465 (V6C47_08475) - 1772069..1772242 (+) 174 Protein_1632 site-specific integrase -
  V6C47_RS08480 (V6C47_08490) comK/comK1 1772795..1773370 (-) 576 WP_367120895.1 competence protein ComK Regulator
  V6C47_RS08485 (V6C47_08495) - 1773590..1773808 (+) 219 WP_030065132.1 IDEAL domain-containing protein -
  V6C47_RS08490 (V6C47_08500) - 1773889..1774875 (-) 987 WP_367120896.1 lipoate--protein ligase -
  V6C47_RS08495 (V6C47_08505) - 1775080..1775265 (+) 186 WP_002433441.1 YkvS family protein -
  V6C47_RS08500 (V6C47_08510) - 1775271..1775873 (+) 603 WP_002433304.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  V6C47_RS08505 (V6C47_08515) - 1775970..1777478 (-) 1509 WP_367120897.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22736.84 Da        Isoelectric Point: 9.5768

>NTDB_id=938181 V6C47_RS08480 WP_367120895.1 1772795..1773370(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKIQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDNIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=938181 V6C47_RS08480 WP_367120895.1 1772795..1773370(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAATTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAACATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCATTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

75.532

98.429

0.743
  comK/comK1 Staphylococcus aureus N315

75.532

98.429

0.743