Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C47_RS06000 | Genome accession | NZ_CP145248 |
| Coordinates | 1227231..1228205 (+) | Length | 324 a.a. |
| NCBI ID | WP_367120615.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365669 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1222231..1233205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C47_RS05965 (V6C47_05980) | rpmG | 1222745..1222894 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C47_RS05970 (V6C47_05985) | - | 1223043..1223594 (+) | 552 | WP_227939313.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C47_RS05975 (V6C47_05990) | - | 1223595..1225058 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6C47_RS05980 (V6C47_05995) | - | 1225039..1225242 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C47_RS05985 (V6C47_06000) | - | 1225239..1226225 (+) | 987 | WP_367120613.1 | ROK family glucokinase | - |
| V6C47_RS05990 (V6C47_06005) | - | 1226225..1226551 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C47_RS05995 (V6C47_06010) | - | 1226551..1227174 (+) | 624 | WP_367120614.1 | MBL fold metallo-hydrolase | - |
| V6C47_RS06000 (V6C47_06015) | comGA | 1227231..1228205 (+) | 975 | WP_367120615.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C47_RS06005 (V6C47_06020) | comGB | 1228177..1229244 (+) | 1068 | WP_367120616.1 | competence type IV pilus assembly protein ComGB | - |
| V6C47_RS06010 (V6C47_06025) | comGC | 1229263..1229574 (+) | 312 | WP_367121880.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C47_RS06015 (V6C47_06030) | comGD | 1229552..1230001 (+) | 450 | WP_367120617.1 | competence type IV pilus minor pilin ComGD | - |
| V6C47_RS06020 (V6C47_06035) | - | 1229988..1230287 (+) | 300 | WP_367120618.1 | hypothetical protein | - |
| V6C47_RS06025 (V6C47_06040) | comGF | 1230205..1230696 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C47_RS06030 (V6C47_06045) | - | 1230866..1231375 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C47_RS06035 (V6C47_06050) | gcvT | 1231585..1232676 (+) | 1092 | WP_367120619.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37080.89 Da Isoelectric Point: 8.1761
>NTDB_id=938174 V6C47_RS06000 WP_367120615.1 1227231..1228205(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MKMLFQEIVNYSIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRNSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHTHQNLNLN
VISIEDPVEQLLNGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEHFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYSIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRNSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHTHQNLNLN
VISIEDPVEQLLNGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEHFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938174 V6C47_RS06000 WP_367120615.1 1227231..1228205(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATTCCATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTCTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTAACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATACCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAAATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGAATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCCAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAACACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATTCCATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTCTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTAACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATACCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAAATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGAATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCCAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAACACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
69.659 |
99.691 |
0.694 |
| comGA | Staphylococcus aureus N315 |
69.659 |
99.691 |
0.694 |