Detailed information NTG0938175

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: V6C47_RS06010
• Genome accession: NZ_CP145248
• Coordinates: 1229263..1229574 (+)
• Length: 103 a.a.
• NCBI ID: WP_367121880.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1365669
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1224263..1234574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C47_RS05980 (V6C47_05995)	-	1225039..1225242 (+)	204	WP_002433937.1	YqgQ family protein	-
V6C47_RS05985 (V6C47_06000)	-	1225239..1226225 (+)	987	WP_367120613.1	ROK family glucokinase	-
V6C47_RS05990 (V6C47_06005)	-	1226225..1226551 (+)	327	WP_002433945.1	MTH1187 family thiamine-binding protein	-
V6C47_RS05995 (V6C47_06010)	-	1226551..1227174 (+)	624	WP_367120614.1	MBL fold metallo-hydrolase	-
V6C47_RS06000 (V6C47_06015)	comGA	1227231..1228205 (+)	975	WP_367120615.1	competence type IV pilus ATPase ComGA	Machinery gene
V6C47_RS06005 (V6C47_06020)	comGB	1228177..1229244 (+)	1068	WP_367120616.1	competence type IV pilus assembly protein ComGB	-
V6C47_RS06010 (V6C47_06025)	comGC	1229263..1229574 (+)	312	WP_367121880.1	competence type IV pilus major pilin ComGC	Machinery gene
V6C47_RS06015 (V6C47_06030)	comGD	1229552..1230001 (+)	450	WP_367120617.1	competence type IV pilus minor pilin ComGD	-
V6C47_RS06020 (V6C47_06035)	-	1229988..1230287 (+)	300	WP_367120618.1	hypothetical protein	-
V6C47_RS06025 (V6C47_06040)	comGF	1230205..1230696 (+)	492	WP_037560565.1	competence type IV pilus minor pilin ComGF	-
V6C47_RS06030 (V6C47_06045)	-	1230866..1231375 (+)	510	WP_029625706.1	shikimate kinase	-
V6C47_RS06035 (V6C47_06050)	gcvT	1231585..1232676 (+)	1092	WP_367120619.1	glycine cleavage system aminomethyltransferase GcvT	-
V6C47_RS06040 (V6C47_06055)	gcvPA	1232695..1234041 (+)	1347	WP_367120620.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 103 a.a.
• Molecular weight: 11319.35 Da
• Isoelectric Point: 9.7122

>NTDB_id=938175 V6C47_RS06010 WP_367121880.1 1229263..1229574(+) (comGC) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MLKKLKKSKAFTLIEMSLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN

Nucleotide

• Length: 312 bp

>NTDB_id=938175 V6C47_RS06010 WP_367121880.1 1229263..1229574(+) (comGC) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTCACTTGTTTTATTAATTATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (6-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	85.437	100	0.854
comGC	Staphylococcus aureus MW2	85.437	100	0.854
comYC	Streptococcus gordonii str. Challis substr. CH1	44.66	100	0.447
comGC/cglC	Streptococcus mitis SK321	44.118	99.029	0.437
comGC/cglC	Streptococcus pneumoniae R6	43.137	99.029	0.427
comGC/cglC	Streptococcus pneumoniae TIGR4	43.137	99.029	0.427
comGC/cglC	Streptococcus pneumoniae Rx1	43.137	99.029	0.427
comGC/cglC	Streptococcus pneumoniae D39	43.137	99.029	0.427
comGC/cglC	Streptococcus mitis NCTC 12261	47.674	83.495	0.398
comYC	Streptococcus mutans UA140	45.455	85.437	0.388
comYC	Streptococcus mutans UA159	45.455	85.437	0.388
comGC	Lactococcus lactis subsp. cremoris KW2	49.367	76.699	0.379
comYC	Streptococcus suis isolate S10	48.718	75.728	0.369