Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V6C47_RS04390 Genome accession   NZ_CP145248
Coordinates   916676..917305 (+) Length   209 a.a.
NCBI ID   WP_367121709.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365669     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 911676..922305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C47_RS04360 (V6C47_04375) isaB 911871..912399 (+) 529 Protein_854 immunodominant staphylococcal antigen IsaB family protein -
  V6C47_RS04365 (V6C47_04380) - 912477..913466 (-) 990 WP_002435886.1 FUSC family protein -
  V6C47_RS04370 (V6C47_04385) map 913641..914396 (+) 756 WP_367121708.1 type I methionyl aminopeptidase -
  V6C47_RS04375 (V6C47_04390) - 914541..914927 (+) 387 WP_002453601.1 hypothetical protein -
  V6C47_RS04380 (V6C47_04395) liaF 914942..915643 (+) 702 WP_002435891.1 cell wall-active antibiotics response protein LiaF -
  V6C47_RS04385 (V6C47_04400) vraS 915640..916686 (+) 1047 WP_002435929.1 sensor histidine kinase Regulator
  V6C47_RS04390 (V6C47_04405) vraR 916676..917305 (+) 630 WP_367121709.1 two-component system response regulator VraR Regulator
  V6C47_RS04395 (V6C47_04410) - 917370..918614 (-) 1245 WP_367121710.1 YihY/virulence factor BrkB family protein -
  V6C47_RS04400 (V6C47_04415) - 918951..919235 (-) 285 WP_002435890.1 hypothetical protein -
  V6C47_RS04405 (V6C47_04420) - 919242..919706 (-) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  V6C47_RS04410 (V6C47_04425) - 919847..920053 (+) 207 WP_049427714.1 DUF1128 domain-containing protein -
  V6C47_RS04415 (V6C47_04430) - 920067..921308 (+) 1242 WP_367121711.1 aminopeptidase -
  V6C47_RS04420 (V6C47_04435) - 921410..921940 (+) 531 WP_002453596.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23659.31 Da        Isoelectric Point: 4.8997

>NTDB_id=938165 V6C47_RS04390 WP_367121709.1 916676..917305(+) (vraR) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MAIKVLFVDDHEMVRIGISSYLSTQQDIEVVGEGASGKEAIEKAHELKPDLILMDLLMDDMDGIEATTEIKKDLPHIRVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTYQGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=938165 V6C47_RS04390 WP_367121709.1 916676..917305(+) (vraR) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
ATGGCGATTAAAGTATTGTTTGTTGATGACCATGAAATGGTTAGAATTGGTATTTCAAGCTATCTATCTACACAACAGGA
TATTGAAGTAGTTGGAGAAGGTGCTTCTGGTAAAGAAGCTATCGAAAAAGCCCATGAGTTGAAACCAGATTTAATTTTAA
TGGATTTACTTATGGATGATATGGATGGTATAGAAGCTACTACTGAAATTAAAAAGGATTTACCTCACATAAGAGTAGTA
ATGTTAACAAGCTTTATCGAGGATAAAGAAGTTTATCGAGCATTAGATGCTGGGGTAGATAGTTATATCTTAAAAACGAC
TAGTGCGAGTGACATTGCTGACGCGGTACGTAAAACATATCAAGGGGAATCTGTTTTTGAACCAGAAGTACTTGTAAAAA
TGAGAAACCGCATGAAAAAACGTGCTGAGTTATATGAAATGCTTACAGAGCGTGAAATGGAAATTTTATTATTAATTGCC
AAAGGCTACTCTAACCAAGAAATTGCTAGCGCCTCTCATATCACTATTAAAACTGTTAAAACACACGTAAGTAATATATT
GAGTAAGTTAGAAGTTCAAGATAGAACTCAAGCTGTTATTTATGCTTTCCAACATAATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.258

100

0.943