Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6D01_RS06210 | Genome accession | NZ_CP145244 |
| Coordinates | 1261945..1262919 (+) | Length | 324 a.a. |
| NCBI ID | WP_145387902.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365670 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1256945..1267919
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6D01_RS06175 (V6D01_06160) | rpmG | 1257458..1257607 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6D01_RS06180 (V6D01_06165) | - | 1257756..1258307 (+) | 552 | WP_030063896.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6D01_RS06185 (V6D01_06170) | - | 1258308..1259771 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6D01_RS06190 (V6D01_06175) | - | 1259752..1259955 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6D01_RS06195 (V6D01_06180) | - | 1259952..1260938 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| V6D01_RS06200 (V6D01_06185) | - | 1260938..1261264 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6D01_RS06205 (V6D01_06190) | - | 1261264..1261887 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| V6D01_RS06210 (V6D01_06195) | comGA | 1261945..1262919 (+) | 975 | WP_145387902.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6D01_RS06215 (V6D01_06200) | comGB | 1262891..1263958 (+) | 1068 | WP_023350201.1 | competence type IV pilus assembly protein ComGB | - |
| V6D01_RS06220 (V6D01_06205) | comGC | 1263977..1264288 (+) | 312 | WP_367122997.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6D01_RS06225 (V6D01_06210) | comGD | 1264266..1264715 (+) | 450 | WP_023350202.1 | competence type IV pilus minor pilin ComGD | - |
| V6D01_RS06230 (V6D01_06215) | - | 1264702..1265001 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| V6D01_RS06235 (V6D01_06220) | comGF | 1264919..1265410 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6D01_RS06240 (V6D01_06225) | - | 1265580..1266089 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6D01_RS06245 (V6D01_06230) | gcvT | 1266298..1267389 (+) | 1092 | WP_367122713.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37062.87 Da Isoelectric Point: 7.7305
>NTDB_id=938141 V6D01_RS06210 WP_145387902.1 1261945..1262919(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=938141 V6D01_RS06210 WP_145387902.1 1261945..1262919(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |