Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6D01_RS04000 Genome accession   NZ_CP145244
Coordinates   825396..825791 (+) Length   131 a.a.
NCBI ID   WP_023351359.1    Uniprot ID   A0A7X9WCS4
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365670     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 820396..830791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D01_RS03970 (V6D01_03960) atpD 820614..822026 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  V6D01_RS03975 (V6D01_03965) - 822046..822450 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  V6D01_RS03980 (V6D01_03970) - 822591..822824 (+) 234 WP_002453705.1 DUF1146 family protein -
  V6D01_RS03985 (V6D01_03975) murA 822934..824199 (+) 1266 WP_367122944.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6D01_RS03990 (V6D01_03980) fabZ 824244..824681 (+) 438 WP_002435844.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V6D01_RS03995 (V6D01_03985) - 824762..825205 (-) 444 WP_002435823.1 YwpF-like family protein -
  V6D01_RS04000 (V6D01_03990) ssb 825396..825791 (+) 396 WP_023351359.1 single-stranded DNA-binding protein Machinery gene
  V6D01_RS04005 (V6D01_03995) - 826186..826911 (+) 726 WP_367122945.1 transglycosylase family protein -
  V6D01_RS04010 (V6D01_04000) tenA 827207..827896 (+) 690 WP_002435801.1 thiaminase II -
  V6D01_RS04015 (V6D01_04005) thiD 827889..828710 (+) 822 WP_002435497.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V6D01_RS04020 (V6D01_04010) thiM 828703..829491 (+) 789 WP_023351361.1 hydroxyethylthiazole kinase -
  V6D01_RS04025 (V6D01_04015) thiE 829498..830136 (+) 639 WP_023351362.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15172.04 Da        Isoelectric Point: 5.2691

>NTDB_id=938129 V6D01_RS04000 WP_023351359.1 825396..825791(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
MLNKIVIVGRLTKDAQIYEKEDNKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=938129 V6D01_RS04000 WP_023351359.1 825396..825791(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAATAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WCS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756