Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V6C49_RS08520 Genome accession   NZ_CP145241
Coordinates   1745296..1745871 (-) Length   191 a.a.
NCBI ID   WP_049389109.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain Sc1365673     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740296..1750871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C49_RS08490 (V6C49_08475) - 1741086..1741223 (-) 138 WP_016898795.1 gallidermin family lantibiotic -
  V6C49_RS08495 (V6C49_08480) - 1742633..1743304 (+) 672 WP_002452899.1 Ltp family lipoprotein -
  V6C49_RS08500 - 1743975..1744262 (+) 288 Protein_1639 Ltp family lipoprotein -
  V6C49_RS08505 - 1744293..1744433 (+) 141 Protein_1640 Ltp family lipoprotein -
  V6C49_RS08520 (V6C49_08500) comK/comK1 1745296..1745871 (-) 576 WP_049389109.1 competence protein ComK Regulator
  V6C49_RS08525 (V6C49_08505) - 1746090..1746308 (+) 219 WP_002452896.1 IDEAL domain-containing protein -
  V6C49_RS08530 (V6C49_08510) - 1746388..1747374 (-) 987 WP_002452895.1 lipoate--protein ligase -
  V6C49_RS08535 (V6C49_08515) - 1747579..1747764 (+) 186 WP_002433441.1 DUF2187 family protein -
  V6C49_RS08540 (V6C49_08520) - 1747770..1748372 (+) 603 WP_016898798.1 CPBP family glutamic-type intramembrane protease -
  V6C49_RS08545 (V6C49_08525) - 1748468..1749976 (-) 1509 WP_049391003.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22741.86 Da        Isoelectric Point: 9.5768

>NTDB_id=938114 V6C49_RS08520 WP_049389109.1 1745296..1745871(-) (comK/comK1) [Staphylococcus capitis subsp. capitis strain Sc1365673]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANSESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQLIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=938114 V6C49_RS08520 WP_049389109.1 1745296..1745871(-) (comK/comK1) [Staphylococcus capitis subsp. capitis strain Sc1365673]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGATATGTTAATTCGACCAAGGTATGATGAATATCAACA
AACTTCAGGGGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAGTACAAAGAATTATTGAAAGGT
CCTGCAAATTTTATGGTAATAGCTATCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACTCCATTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGTCAAGATGAAAACATCTGGATAAACAT
GCATTATATTGATAGCATCAAAGAACTAAAAAATCGTAAAAGTAAAGTGATATTTGCTAATAGTGAATCATTTATATTAA
ACGTTTCTTATCATAGCTTATGGCATCAATATACGAACGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAACCCAGAACAACTCATTGATTATAACCAATCATCGTTAAATATATTTGAAGCTCTTTCAAGGTATTCACT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.064

98.429

0.749
  comK/comK1 Staphylococcus aureus N315

76.064

98.429

0.749