Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C49_RS07490 Genome accession   NZ_CP145241
Coordinates   1522542..1523414 (-) Length   290 a.a.
NCBI ID   WP_367141591.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain Sc1365673     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1517542..1528414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C49_RS07475 (V6C49_07465) xerC 1517829..1518719 (-) 891 WP_367141590.1 tyrosine recombinase XerC -
  V6C49_RS07480 (V6C49_07470) trmFO 1518956..1520263 (-) 1308 WP_002453084.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C49_RS07485 (V6C49_07475) topA 1520289..1522364 (-) 2076 WP_029625697.1 type I DNA topoisomerase -
  V6C49_RS07490 (V6C49_07480) dprA 1522542..1523414 (-) 873 WP_367141591.1 DNA-processing protein DprA Machinery gene
  V6C49_RS07495 (V6C49_07485) sucD 1523903..1524811 (-) 909 WP_002453081.1 succinate--CoA ligase subunit alpha -
  V6C49_RS07500 (V6C49_07490) sucC 1524833..1525999 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C49_RS07505 (V6C49_07495) - 1526107..1526877 (-) 771 WP_002453080.1 ribonuclease HII -
  V6C49_RS07510 (V6C49_07500) ylqF 1526879..1527745 (-) 867 WP_002453079.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33465.52 Da        Isoelectric Point: 9.1538

>NTDB_id=938113 V6C49_RS07490 WP_367141591.1 1522542..1523414(-) (dprA) [Staphylococcus capitis subsp. capitis strain Sc1365673]
MIQHILLKLYWANFTTTQIHQFIKDYPEVISESPPTQKEMIEDWTIRQTTSTLKKKFNLFKSLDTEVLLQEMSKKNLKFL
TYFDKNYPQLLKEIYDFPYIIFYKGNKQLFNYPHTLAVIGSRKSTSYTTQALEYLFPSFKQLKMTIISGLAYGADSVAHQ
VALKNQLPTIGVLGFGHSYHYPKSTFKTRESVEREGLVISEYPPHSPISRYKFPERNRLISGLARGLLITEAEEISGSQI
TVDCALEQNRNVYVLPGSMFNPMIKSNLLRLQEGAQVVLDESSILSDYNF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=938113 V6C49_RS07490 WP_367141591.1 1522542..1523414(-) (dprA) [Staphylococcus capitis subsp. capitis strain Sc1365673]
GTGATCCAACATATTTTATTGAAGCTCTATTGGGCTAATTTCACCACCACTCAAATTCATCAATTCATTAAAGATTACCC
TGAAGTTATATCAGAAAGCCCTCCAACTCAAAAAGAAATGATTGAAGATTGGACTATAAGACAAACCACCTCCACATTGA
AGAAAAAATTCAACTTATTTAAATCACTTGATACAGAAGTTCTACTTCAAGAAATGTCAAAAAAGAACCTCAAATTTTTA
ACTTACTTTGATAAAAATTATCCTCAATTACTTAAAGAAATTTATGATTTTCCATATATAATATTTTACAAAGGAAATAA
ACAACTATTTAACTATCCGCATACTTTAGCTGTTATAGGATCAAGAAAGTCCACTTCATATACCACACAAGCATTAGAAT
ATCTATTTCCCTCATTTAAACAACTAAAAATGACGATTATATCAGGATTAGCATACGGTGCAGATAGTGTAGCTCATCAA
GTTGCACTAAAAAATCAACTGCCAACAATAGGAGTTCTTGGTTTTGGACATTCATATCATTATCCTAAATCAACTTTTAA
AACAAGAGAGAGTGTCGAACGAGAAGGGCTCGTTATAAGTGAGTATCCGCCGCATTCTCCTATATCCAGATATAAATTTC
CAGAAAGAAATAGATTGATTAGTGGTCTCGCTCGAGGTTTATTAATTACAGAAGCAGAGGAAATAAGTGGTAGTCAAATA
ACAGTAGATTGCGCTTTAGAACAAAATCGAAATGTATATGTTTTACCAGGATCAATGTTCAATCCTATGATCAAAAGTAA
TTTACTTAGGCTTCAAGAGGGTGCACAAGTAGTTTTAGATGAAAGTAGTATCCTTTCGGACTACAATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

58.333

99.31

0.579
  dprA Staphylococcus aureus MW2

58.333

99.31

0.579