Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6C48_RS04040 Genome accession   NZ_CP145236
Coordinates   858353..858748 (+) Length   131 a.a.
NCBI ID   WP_072098642.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365682     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 853353..863748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C48_RS04010 (V6C48_04005) atpD 853571..854983 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  V6C48_RS04015 (V6C48_04010) - 855003..855407 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  V6C48_RS04020 (V6C48_04015) - 855548..855781 (+) 234 WP_002453705.1 DUF1146 family protein -
  V6C48_RS04025 (V6C48_04020) murA 855891..857156 (+) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6C48_RS04030 (V6C48_04025) fabZ 857201..857638 (+) 438 WP_023351358.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V6C48_RS04035 (V6C48_04030) - 857719..858162 (-) 444 WP_002435823.1 YwpF-like family protein -
  V6C48_RS04040 (V6C48_04035) ssb 858353..858748 (+) 396 WP_072098642.1 single-stranded DNA-binding protein Machinery gene
  V6C48_RS04045 (V6C48_04040) - 859143..859868 (+) 726 WP_023351360.1 transglycosylase family protein -
  V6C48_RS04050 (V6C48_04045) tenA 860164..860853 (+) 690 WP_002435801.1 thiaminase II -
  V6C48_RS04055 (V6C48_04050) thiD 860846..861667 (+) 822 WP_002435497.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V6C48_RS04060 (V6C48_04055) thiM 861660..862448 (+) 789 WP_023351361.1 hydroxyethylthiazole kinase -
  V6C48_RS04065 (V6C48_04060) thiE 862455..863093 (+) 639 WP_023351362.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15202.07 Da        Isoelectric Point: 5.2691

>NTDB_id=938030 V6C48_RS04040 WP_072098642.1 858353..858748(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1365682]
MLNKIVIVGRLTKDAQIYEKEDNKVATFCVATERNYKDENNEISSDYLLCKAFGKTTTNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=938030 V6C48_RS04040 WP_072098642.1 858353..858748(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1365682]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAATAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAACAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

100

0.756
  ssb Staphylococcus aureus MW2

74.809

100

0.748