Detailed information
Bioinformatically predicted
Overview
| Name | comK/comK1 | Type | Regulator |
| Locus tag | V6C70_RS09970 | Genome accession | NZ_CP145235 |
| Coordinates | 1982140..1982715 (-) | Length | 191 a.a. |
| NCBI ID | WP_023350568.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365688 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1935917..1981628 | 1982140..1982715 | flank | 512 |
Gene organization within MGE regions
Location: 1935917..1982715
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C70_RS09595 (V6C70_09575) | - | 1935917..1936114 (-) | 198 | WP_023350503.1 | hypothetical protein | - |
| V6C70_RS09600 (V6C70_09580) | - | 1937064..1937249 (-) | 186 | WP_023350504.1 | hypothetical protein | - |
| V6C70_RS09605 (V6C70_09585) | - | 1937251..1937361 (-) | 111 | WP_049307399.1 | hypothetical protein | - |
| V6C70_RS09610 (V6C70_09590) | - | 1937432..1937583 (-) | 152 | Protein_1809 | hypothetical protein | - |
| V6C70_RS09615 (V6C70_09595) | - | 1937730..1939193 (-) | 1464 | WP_023350505.1 | SH3 domain-containing protein | - |
| V6C70_RS09620 (V6C70_09600) | - | 1939168..1939578 (-) | 411 | WP_023350506.1 | phage holin | - |
| V6C70_RS09625 (V6C70_09605) | - | 1939623..1940156 (-) | 534 | WP_023350507.1 | hypothetical protein | - |
| V6C70_RS09630 (V6C70_09610) | - | 1940156..1940671 (-) | 516 | WP_023350508.1 | hypothetical protein | - |
| V6C70_RS09635 (V6C70_09615) | - | 1940713..1940859 (-) | 147 | WP_023350509.1 | XkdX family protein | - |
| V6C70_RS09640 (V6C70_09620) | - | 1940852..1941196 (-) | 345 | WP_023350510.1 | hypothetical protein | - |
| V6C70_RS09645 (V6C70_09625) | - | 1941208..1942866 (-) | 1659 | WP_023350511.1 | BppU family phage baseplate upper protein | - |
| V6C70_RS09650 (V6C70_09630) | - | 1942919..1944121 (-) | 1203 | WP_023350512.1 | N-acetylglucosaminidase | - |
| V6C70_RS09655 (V6C70_09635) | - | 1944770..1945006 (-) | 237 | Protein_1818 | CHAP domain-containing protein | - |
| V6C70_RS09660 (V6C70_09640) | - | 1945321..1945452 (-) | 132 | WP_023350514.1 | hypothetical protein | - |
| V6C70_RS09665 (V6C70_09645) | - | 1945506..1945904 (-) | 399 | WP_037560594.1 | hypothetical protein | - |
| V6C70_RS09670 (V6C70_09650) | - | 1945885..1946307 (-) | 423 | WP_023350516.1 | hypothetical protein | - |
| V6C70_RS09675 (V6C70_09655) | - | 1946321..1947508 (-) | 1188 | WP_023350517.1 | BppU family phage baseplate upper protein | - |
| V6C70_RS09680 (V6C70_09660) | - | 1947521..1949407 (-) | 1887 | WP_023350518.1 | M14 family metallopeptidase | - |
| V6C70_RS09685 (V6C70_09665) | - | 1949410..1950870 (-) | 1461 | WP_023350519.1 | phage tail protein | - |
| V6C70_RS09690 (V6C70_09670) | - | 1950882..1951838 (-) | 957 | WP_023350520.1 | phage tail domain-containing protein | - |
| V6C70_RS09695 (V6C70_09675) | - | 1951850..1955779 (-) | 3930 | WP_023350521.1 | TMP repeat protein | - |
| V6C70_RS09700 (V6C70_09680) | - | 1955794..1956138 (-) | 345 | WP_023350522.1 | hypothetical protein | - |
| V6C70_RS09705 (V6C70_09685) | - | 1956180..1956539 (-) | 360 | WP_023350523.1 | tail assembly chaperone | - |
| V6C70_RS09710 (V6C70_09690) | - | 1956602..1957156 (-) | 555 | WP_002436441.1 | phage major tail protein, TP901-1 family | - |
| V6C70_RS09715 (V6C70_09695) | - | 1957203..1957592 (-) | 390 | WP_023350524.1 | hypothetical protein | - |
| V6C70_RS09720 (V6C70_09700) | - | 1957886..1958572 (-) | 687 | WP_023350525.1 | hypothetical protein | - |
| V6C70_RS09725 (V6C70_09705) | - | 1958696..1958944 (-) | 249 | Protein_1832 | hypothetical protein | - |
| V6C70_RS09730 (V6C70_09710) | - | 1958944..1959246 (-) | 303 | WP_023350527.1 | hypothetical protein | - |
| V6C70_RS09735 (V6C70_09715) | - | 1959243..1959572 (-) | 330 | WP_002436519.1 | phage head-tail connector protein | - |
| V6C70_RS09740 (V6C70_09720) | - | 1959574..1959843 (-) | 270 | WP_023350528.1 | hypothetical protein | - |
| V6C70_RS09745 (V6C70_09725) | - | 1959866..1960780 (-) | 915 | WP_023350529.1 | phage major capsid protein | - |
| V6C70_RS09750 (V6C70_09730) | - | 1960797..1961411 (-) | 615 | WP_023350530.1 | DUF4355 domain-containing protein | - |
| V6C70_RS09755 (V6C70_09735) | - | 1961664..1961807 (-) | 144 | WP_002436512.1 | hypothetical protein | - |
| V6C70_RS09760 (V6C70_09740) | - | 1961800..1962345 (-) | 546 | WP_023350531.1 | hypothetical protein | - |
| V6C70_RS09765 (V6C70_09745) | - | 1962365..1963315 (-) | 951 | Protein_1840 | minor capsid protein | - |
| V6C70_RS09770 (V6C70_09750) | - | 1963322..1964818 (-) | 1497 | WP_023350534.1 | phage portal protein | - |
| V6C70_RS09775 (V6C70_09755) | - | 1964832..1966124 (-) | 1293 | WP_023350535.1 | PBSX family phage terminase large subunit | - |
| V6C70_RS09780 (V6C70_09760) | - | 1966117..1966458 (-) | 342 | WP_023350536.1 | phBC6A51 family helix-turn-helix protein | - |
| V6C70_RS09785 (V6C70_09765) | - | 1966736..1967152 (-) | 417 | WP_002436508.1 | hypothetical protein | - |
| V6C70_RS09790 (V6C70_09770) | - | 1967223..1967393 (-) | 171 | WP_002469957.1 | hypothetical protein | - |
| V6C70_RS09795 (V6C70_09775) | - | 1967399..1967539 (-) | 141 | WP_002475527.1 | DUF1381 domain-containing protein | - |
| V6C70_RS09800 (V6C70_09780) | - | 1967541..1967717 (-) | 177 | WP_023350538.1 | hypothetical protein | - |
| V6C70_RS09805 (V6C70_09785) | dut | 1967754..1968179 (-) | 426 | WP_023350540.1 | dUTP diphosphatase | - |
| V6C70_RS09810 (V6C70_09790) | - | 1968181..1968378 (-) | 198 | WP_023350541.1 | hypothetical protein | - |
| V6C70_RS09815 (V6C70_09795) | - | 1968362..1968916 (-) | 555 | WP_023350542.1 | nucleoside 2-deoxyribosyltransferase | - |
| V6C70_RS09820 (V6C70_09800) | - | 1968919..1969116 (-) | 198 | WP_023350543.1 | hypothetical protein | - |
| V6C70_RS09825 (V6C70_09805) | - | 1969117..1969464 (-) | 348 | WP_367009776.1 | SA1788 family PVL leukocidin-associated protein | - |
| V6C70_RS09830 (V6C70_09810) | - | 1969465..1969656 (-) | 192 | WP_023350545.1 | hypothetical protein | - |
| V6C70_RS09835 (V6C70_09815) | - | 1969646..1970056 (-) | 411 | WP_023350546.1 | DUF1064 domain-containing protein | - |
| V6C70_RS09840 (V6C70_09820) | - | 1970065..1970310 (-) | 246 | WP_002469995.1 | DUF3269 family protein | - |
| V6C70_RS09845 (V6C70_09825) | - | 1970313..1970468 (-) | 156 | WP_002469952.1 | hypothetical protein | - |
| V6C70_RS09850 (V6C70_09830) | - | 1970462..1971223 (-) | 762 | WP_227707438.1 | ATP-binding protein | - |
| V6C70_RS09855 (V6C70_09835) | - | 1971243..1971998 (-) | 756 | WP_037560596.1 | conserved phage C-terminal domain-containing protein | - |
| V6C70_RS09860 (V6C70_09840) | - | 1971985..1972665 (-) | 681 | WP_023350548.1 | putative HNHc nuclease | - |
| V6C70_RS09865 (V6C70_09845) | ssbA | 1972679..1973092 (-) | 414 | WP_023350549.1 | single-stranded DNA-binding protein | Machinery gene |
| V6C70_RS09870 (V6C70_09850) | - | 1973085..1973738 (-) | 654 | WP_023350550.1 | ERF family protein | - |
| V6C70_RS09875 (V6C70_09855) | - | 1973731..1973952 (-) | 222 | WP_023350551.1 | DUF2483 family protein | - |
| V6C70_RS09880 (V6C70_09860) | - | 1973918..1974199 (-) | 282 | WP_367009777.1 | chordopoxvirus fusion protein | - |
| V6C70_RS09885 (V6C70_09865) | - | 1974221..1974439 (-) | 219 | WP_023350553.1 | hypothetical protein | - |
| V6C70_RS09890 (V6C70_09870) | - | 1974917..1975129 (-) | 213 | WP_002436465.1 | DUF771 domain-containing protein | - |
| V6C70_RS09895 (V6C70_09875) | - | 1975133..1975300 (-) | 168 | WP_023350555.1 | hypothetical protein | - |
| V6C70_RS09900 (V6C70_09880) | - | 1975402..1975596 (-) | 195 | WP_023350556.1 | hypothetical protein | - |
| V6C70_RS09905 (V6C70_09885) | - | 1975679..1975855 (+) | 177 | WP_023350557.1 | hypothetical protein | - |
| V6C70_RS09910 (V6C70_09890) | - | 1975881..1975979 (-) | 99 | Protein_1869 | hypothetical protein | - |
| V6C70_RS09915 (V6C70_09895) | - | 1976069..1976245 (-) | 177 | WP_023350559.1 | hypothetical protein | - |
| V6C70_RS09920 (V6C70_09900) | - | 1976328..1977098 (-) | 771 | WP_023350560.1 | DUF6551 family protein | - |
| V6C70_RS09925 (V6C70_09905) | - | 1977095..1978051 (-) | 957 | WP_049307539.1 | ParB N-terminal domain-containing protein | - |
| V6C70_RS09930 (V6C70_09910) | - | 1978067..1978306 (-) | 240 | WP_023350563.1 | helix-turn-helix transcriptional regulator | - |
| V6C70_RS09935 (V6C70_09915) | - | 1978500..1978829 (+) | 330 | WP_002469947.1 | helix-turn-helix transcriptional regulator | - |
| V6C70_RS09940 (V6C70_09920) | - | 1978841..1979302 (+) | 462 | WP_023350564.1 | ImmA/IrrE family metallo-endopeptidase | - |
| V6C70_RS09945 (V6C70_09925) | - | 1979321..1979845 (+) | 525 | WP_023350565.1 | Ltp family lipoprotein | - |
| V6C70_RS09950 (V6C70_09930) | - | 1979860..1980507 (+) | 648 | WP_023350566.1 | hypothetical protein | - |
| V6C70_RS09955 (V6C70_09935) | - | 1980567..1981628 (+) | 1062 | WP_023350567.1 | tyrosine-type recombinase/integrase | - |
| V6C70_RS09970 (V6C70_09950) | comK/comK1 | 1982140..1982715 (-) | 576 | WP_023350568.1 | competence protein ComK | Regulator |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22722.82 Da Isoelectric Point: 9.5768
>NTDB_id=938016 V6C70_RS09970 WP_023350568.1 1982140..1982715(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1365688]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDNIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDNIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK
Nucleotide
Download Length: 576 bp
>NTDB_id=938016 V6C70_RS09970 WP_023350568.1 1982140..1982715(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1365688]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGCAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAACATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCATTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGCAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAACATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCATTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK/comK1 | Staphylococcus aureus MW2 |
76.064 |
98.429 |
0.749 |
| comK/comK1 | Staphylococcus aureus N315 |
76.064 |
98.429 |
0.749 |