Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V6C55_RS08675 Genome accession   NZ_CP145224
Coordinates   1831053..1831628 (-) Length   191 a.a.
NCBI ID   WP_002433165.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365701     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826053..1836628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C55_RS08645 (V6C55_08640) - 1826730..1826864 (-) 135 WP_002469996.1 gallidermin family lantibiotic -
  V6C55_RS08650 (V6C55_08645) - 1827937..1828302 (+) 366 WP_030065139.1 hypothetical protein -
  V6C55_RS08655 (V6C55_08650) - 1828323..1828994 (+) 672 WP_047796099.1 Ltp family lipoprotein -
  V6C55_RS08660 (V6C55_08655) - 1829600..1830127 (+) 528 WP_030065136.1 Ltp family lipoprotein -
  V6C55_RS08675 (V6C55_08670) comK/comK1 1831053..1831628 (-) 576 WP_002433165.1 competence protein ComK Regulator
  V6C55_RS08680 (V6C55_08675) - 1831848..1832066 (+) 219 WP_030065132.1 IDEAL domain-containing protein -
  V6C55_RS08685 (V6C55_08680) - 1832147..1833133 (-) 987 WP_047796044.1 lipoate--protein ligase -
  V6C55_RS08690 (V6C55_08685) - 1833338..1833523 (+) 186 WP_002433441.1 DUF2187 family protein -
  V6C55_RS08695 (V6C55_08690) - 1833529..1834131 (+) 603 WP_002433304.1 CPBP family glutamic-type intramembrane protease -
  V6C55_RS08700 (V6C55_08695) - 1834227..1835735 (-) 1509 WP_047796043.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22695.79 Da        Isoelectric Point: 9.5768

>NTDB_id=937943 V6C55_RS08675 WP_002433165.1 1831053..1831628(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1365701]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=937943 V6C55_RS08675 WP_002433165.1 1831053..1831628(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1365701]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAGAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAGCATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCATTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.596

98.429

0.754
  comK/comK1 Staphylococcus aureus N315

76.596

98.429

0.754