Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C55_RS07635 Genome accession   NZ_CP145224
Coordinates   1607955..1608827 (-) Length   290 a.a.
NCBI ID   WP_145366306.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365701     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1602955..1613827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C55_RS07620 (V6C55_07615) xerC 1603242..1604132 (-) 891 WP_047796198.1 tyrosine recombinase XerC -
  V6C55_RS07625 (V6C55_07620) trmFO 1604369..1605676 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C55_RS07630 (V6C55_07625) topA 1605702..1607777 (-) 2076 WP_186306228.1 type I DNA topoisomerase -
  V6C55_RS07635 (V6C55_07630) dprA 1607955..1608827 (-) 873 WP_145366306.1 DNA-processing protein DprA Machinery gene
  V6C55_RS07640 (V6C55_07635) sucD 1609053..1609961 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C55_RS07645 (V6C55_07640) sucC 1609983..1611149 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C55_RS07650 (V6C55_07645) - 1611257..1612027 (-) 771 WP_047796195.1 ribonuclease HII -
  V6C55_RS07655 (V6C55_07650) ylqF 1612011..1612894 (-) 884 Protein_1471 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33483.76 Da        Isoelectric Point: 9.6758

>NTDB_id=937942 V6C55_RS07635 WP_145366306.1 1607955..1608827(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365701]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWVKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNQLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYRPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937942 V6C55_RS07635 WP_145366306.1 1607955..1608827(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365701]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATGAGATGATTGAGGATTGGGTTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTTGCACTAAAAAATCAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCATTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCGACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586