Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6C75_RS03890 Genome accession   NZ_CP145221
Coordinates   825811..826206 (+) Length   131 a.a.
NCBI ID   WP_002435780.1    Uniprot ID   A0A7Z7YUN8
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365706     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 820811..831206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C75_RS03860 atpD 821029..822441 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  V6C75_RS03865 - 822461..822865 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  V6C75_RS03870 - 823006..823239 (+) 234 WP_002453705.1 DUF1146 family protein -
  V6C75_RS03875 murA 823349..824614 (+) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6C75_RS03880 fabZ 824659..825096 (+) 438 WP_002435844.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V6C75_RS03885 - 825177..825620 (-) 444 WP_002435823.1 YwpF-like family protein -
  V6C75_RS03890 ssb 825811..826206 (+) 396 WP_002435780.1 single-stranded DNA-binding protein Machinery gene
  V6C75_RS03895 - 826601..827326 (+) 726 WP_002453702.1 transglycosylase family protein -
  V6C75_RS03900 tenA 827622..828317 (+) 696 WP_047796516.1 thiaminase II -
  V6C75_RS03905 thiD 828304..829125 (+) 822 WP_047796515.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V6C75_RS03910 thiM 829118..829906 (+) 789 WP_002435520.1 hydroxyethylthiazole kinase -
  V6C75_RS03915 thiE 829913..830551 (+) 639 WP_047796514.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15145.02 Da        Isoelectric Point: 5.2691

>NTDB_id=937888 V6C75_RS03890 WP_002435780.1 825811..826206(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=937888 V6C75_RS03890 WP_002435780.1 825811..826206(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7YUN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756