Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C87_RS07955 Genome accession   NZ_CP145214
Coordinates   1599537..1600409 (-) Length   290 a.a.
NCBI ID   WP_049428539.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365754     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1594537..1605409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C87_RS07940 (V6C87_07945) xerC 1594824..1595714 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  V6C87_RS07945 (V6C87_07950) trmFO 1595951..1597258 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C87_RS07950 (V6C87_07955) topA 1597284..1599359 (-) 2076 WP_367009357.1 type I DNA topoisomerase -
  V6C87_RS07955 (V6C87_07960) dprA 1599537..1600409 (-) 873 WP_049428539.1 DNA-processing protein DprA Machinery gene
  V6C87_RS07960 (V6C87_07965) sucD 1600634..1601542 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C87_RS07965 (V6C87_07970) sucC 1601564..1602730 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C87_RS07970 (V6C87_07975) - 1602838..1603608 (-) 771 WP_030064786.1 ribonuclease HII -
  V6C87_RS07975 (V6C87_07980) ylqF 1603592..1604475 (-) 884 Protein_1466 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33454.71 Da        Isoelectric Point: 9.5761

>NTDB_id=937802 V6C87_RS07955 WP_049428539.1 1599537..1600409(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365754]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIDSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937802 V6C87_RS07955 WP_049428539.1 1599537..1600409(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1365754]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAATGCACTAATTCAAAATGAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGACAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGACTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ACCTTTTCCCATCATTTAAATCACTGAAAATGACGATTATTTCCGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGTGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

58.681

99.31

0.583
  dprA Staphylococcus aureus MW2

58.681

99.31

0.583