Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V6C56_RS08540 Genome accession   NZ_CP145208
Coordinates   1797923..1798498 (-) Length   191 a.a.
NCBI ID   WP_037582576.1    Uniprot ID   A0A7X9WC93
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1516939     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1792923..1803498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C56_RS08510 (V6C56_08510) - 1793593..1793727 (-) 135 WP_030065142.1 gallidermin family lantibiotic -
  V6C56_RS08515 (V6C56_08515) - 1794799..1795164 (+) 366 WP_030065139.1 hypothetical protein -
  V6C56_RS08520 (V6C56_08520) - 1795185..1795856 (+) 672 WP_047796099.1 Ltp family lipoprotein -
  V6C56_RS08525 (V6C56_08525) - 1796463..1796990 (+) 528 WP_030065136.1 Ltp family lipoprotein -
  V6C56_RS08540 (V6C56_08540) comK/comK1 1797923..1798498 (-) 576 WP_037582576.1 competence protein ComK Regulator
  V6C56_RS08545 (V6C56_08545) - 1798718..1798936 (+) 219 WP_030065132.1 IDEAL domain-containing protein -
  V6C56_RS08550 (V6C56_08550) - 1799017..1800003 (-) 987 WP_047796044.1 lipoate--protein ligase -
  V6C56_RS08555 (V6C56_08555) - 1800208..1800393 (+) 186 WP_002433441.1 DUF2187 family protein -
  V6C56_RS08560 (V6C56_08560) - 1800399..1801001 (+) 603 WP_002433304.1 CPBP family glutamic-type intramembrane protease -
  V6C56_RS08565 (V6C56_08565) - 1801098..1802606 (-) 1509 WP_030065128.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22694.85 Da        Isoelectric Point: 9.5768

>NTDB_id=937770 V6C56_RS08540 WP_037582576.1 1797923..1798498(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
MTIFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=937770 V6C56_RS08540 WP_037582576.1 1797923..1798498(-) (comK/comK1) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
ATGACTATTTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAGAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAGCATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCCTTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WC93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.19

98.953

0.754
  comK/comK1 Staphylococcus aureus N315

76.19

98.953

0.754