Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C56_RS06040 | Genome accession | NZ_CP145208 |
| Coordinates | 1245404..1246378 (+) | Length | 324 a.a. |
| NCBI ID | WP_049427590.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516939 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1240404..1251378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C56_RS06005 (V6C56_06005) | rpmG | 1240917..1241066 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C56_RS06010 (V6C56_06010) | - | 1241215..1241766 (+) | 552 | WP_030063896.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C56_RS06015 (V6C56_06015) | - | 1241767..1243230 (+) | 1464 | WP_023350197.1 | rhomboid family intramembrane serine protease | - |
| V6C56_RS06020 (V6C56_06020) | - | 1243211..1243414 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C56_RS06025 (V6C56_06025) | - | 1243411..1244397 (+) | 987 | WP_186334168.1 | ROK family glucokinase | - |
| V6C56_RS06030 (V6C56_06030) | - | 1244397..1244723 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C56_RS06035 (V6C56_06035) | - | 1244723..1245346 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| V6C56_RS06040 (V6C56_06040) | comGA | 1245404..1246378 (+) | 975 | WP_049427590.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C56_RS06045 (V6C56_06045) | comGB | 1246350..1247417 (+) | 1068 | WP_049427592.1 | competence type IV pilus assembly protein ComGB | - |
| V6C56_RS06050 (V6C56_06050) | comGC | 1247436..1247747 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C56_RS06055 (V6C56_06055) | comGD | 1247725..1248174 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| V6C56_RS06060 (V6C56_06060) | - | 1248161..1248460 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| V6C56_RS06065 (V6C56_06065) | comGF | 1248441..1248869 (+) | 429 | WP_231098764.1 | competence type IV pilus minor pilin ComGF | - |
| V6C56_RS06070 (V6C56_06070) | - | 1249039..1249548 (+) | 510 | WP_336390744.1 | shikimate kinase | - |
| V6C56_RS06075 (V6C56_06075) | gcvT | 1249757..1250848 (+) | 1092 | WP_037549231.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37028.86 Da Isoelectric Point: 7.7305
>NTDB_id=937763 V6C56_RS06040 WP_049427590.1 1245404..1246378(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSIKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSIKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=937763 V6C56_RS06040 WP_049427590.1 1245404..1246378(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1516939]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGAATAAA
TTATACTAACTCTATTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCCAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAGCACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGAATAAA
TTATACTAACTCTATTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCCAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAGCACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.279 |
99.691 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.279 |
99.691 |
0.701 |