Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V6C60_RS04100 | Genome accession | NZ_CP145206 |
| Coordinates | 847903..848298 (+) | Length | 131 a.a. |
| NCBI ID | WP_002435780.1 | Uniprot ID | A0A7Z7YUN8 |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516941 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 842903..853298
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C60_RS04070 (V6C60_04065) | atpD | 843121..844533 (+) | 1413 | WP_002435865.1 | F0F1 ATP synthase subunit beta | - |
| V6C60_RS04075 (V6C60_04070) | - | 844553..844957 (+) | 405 | WP_002435826.1 | F0F1 ATP synthase subunit epsilon | - |
| V6C60_RS04080 (V6C60_04075) | - | 845098..845331 (+) | 234 | WP_002453705.1 | DUF1146 family protein | - |
| V6C60_RS04085 (V6C60_04080) | murA | 845441..846706 (+) | 1266 | WP_002435807.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| V6C60_RS04090 (V6C60_04085) | fabZ | 846751..847188 (+) | 438 | WP_367009572.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| V6C60_RS04095 (V6C60_04090) | - | 847269..847712 (-) | 444 | WP_002435823.1 | YwpF-like family protein | - |
| V6C60_RS04100 (V6C60_04095) | ssb | 847903..848298 (+) | 396 | WP_002435780.1 | single-stranded DNA-binding protein | Machinery gene |
| V6C60_RS04105 (V6C60_04100) | - | 848693..849418 (+) | 726 | WP_002453702.1 | transglycosylase family protein | - |
| V6C60_RS04110 (V6C60_04105) | tenA | 849714..850409 (+) | 696 | WP_047796516.1 | thiaminase II | - |
| V6C60_RS04115 (V6C60_04110) | thiD | 850396..851217 (+) | 822 | WP_047796515.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| V6C60_RS04120 (V6C60_04115) | thiM | 851210..851998 (+) | 789 | WP_002435520.1 | hydroxyethylthiazole kinase | - |
| V6C60_RS04125 (V6C60_04120) | thiE | 852005..852643 (+) | 639 | WP_047796514.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15145.02 Da Isoelectric Point: 5.2691
>NTDB_id=937715 V6C60_RS04100 WP_002435780.1 847903..848298(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI
Nucleotide
Download Length: 396 bp
>NTDB_id=937715 V6C60_RS04100 WP_002435780.1 847903..848298(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1516941]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
76.336 |
100 |
0.763 |
| ssb | Staphylococcus aureus MW2 |
75.573 |
100 |
0.756 |