Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V6C54_RS03900 | Genome accession | NZ_CP145201 |
| Coordinates | 832005..832400 (+) | Length | 131 a.a. |
| NCBI ID | WP_002435780.1 | Uniprot ID | A0A7Z7YUN8 |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516943 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 827005..837400
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C54_RS03870 (V6C54_03895) | atpD | 827223..828635 (+) | 1413 | WP_002435865.1 | F0F1 ATP synthase subunit beta | - |
| V6C54_RS03875 (V6C54_03900) | - | 828655..829059 (+) | 405 | WP_002435826.1 | F0F1 ATP synthase subunit epsilon | - |
| V6C54_RS03880 (V6C54_03905) | - | 829200..829433 (+) | 234 | WP_002453705.1 | DUF1146 family protein | - |
| V6C54_RS03885 (V6C54_03910) | murA | 829543..830808 (+) | 1266 | WP_002435807.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| V6C54_RS03890 (V6C54_03915) | fabZ | 830853..831290 (+) | 438 | WP_002435844.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| V6C54_RS03895 (V6C54_03920) | - | 831371..831814 (-) | 444 | WP_002435823.1 | YwpF-like family protein | - |
| V6C54_RS03900 (V6C54_03925) | ssb | 832005..832400 (+) | 396 | WP_002435780.1 | single-stranded DNA-binding protein | Machinery gene |
| V6C54_RS03905 (V6C54_03930) | - | 832795..833520 (+) | 726 | WP_002453702.1 | transglycosylase family protein | - |
| V6C54_RS03910 (V6C54_03935) | tenA | 833816..834511 (+) | 696 | WP_047796516.1 | thiaminase II | - |
| V6C54_RS03915 (V6C54_03940) | thiD | 834498..835319 (+) | 822 | WP_047796515.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| V6C54_RS03920 (V6C54_03945) | thiM | 835312..836100 (+) | 789 | WP_002435520.1 | hydroxyethylthiazole kinase | - |
| V6C54_RS03925 (V6C54_03950) | thiE | 836107..836745 (+) | 639 | WP_047796514.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15145.02 Da Isoelectric Point: 5.2691
>NTDB_id=937681 V6C54_RS03900 WP_002435780.1 832005..832400(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI
Nucleotide
Download Length: 396 bp
>NTDB_id=937681 V6C54_RS03900 WP_002435780.1 832005..832400(+) (ssb) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
76.336 |
100 |
0.763 |
| ssb | Staphylococcus aureus MW2 |
75.573 |
100 |
0.756 |