Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACET1B_RS11000 Genome accession   NZ_CP168991
Coordinates   2160158..2161990 (+) Length   610 a.a.
NCBI ID   WP_001283425.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155158..2166990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1B_RS10960 (ACET1B_10960) dcyD 2155385..2156371 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ACET1B_RS10965 (ACET1B_10965) tcyL 2156386..2157054 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ACET1B_RS10970 (ACET1B_10970) tcyN 2157051..2157803 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ACET1B_RS10975 (ACET1B_10975) sdiA 2158033..2158755 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  ACET1B_RS10980 (ACET1B_10980) yecF 2158822..2159046 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ACET1B_RS10985 (ACET1B_10985) yecU 2159033..2159209 (-) 177 WP_000590347.1 protein YecU -
  ACET1B_RS10990 (ACET1B_10990) - 2159292..2159363 (-) 72 Protein_2149 transcriptional regulator -
  ACET1B_RS10995 (ACET1B_10995) letA 2159505..2160161 (+) 657 WP_000611339.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ACET1B_RS11000 (ACET1B_11000) uvrC 2160158..2161990 (+) 1833 WP_001283425.1 excinuclease ABC subunit UvrC Machinery gene
  ACET1B_RS11005 (ACET1B_11005) pgsA 2162047..2162595 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACET1B_RS11025 (ACET1B_11025) yecA 2163245..2163910 (+) 666 WP_000847902.1 UPF0149 family protein YecA -
  ACET1B_RS11030 (ACET1B_11030) tyrP 2163972..2165184 (-) 1213 Protein_2154 tyrosine transporter TyrP -
  ACET1B_RS11035 (ACET1B_11035) yecH 2165375..2165614 (+) 240 WP_000377224.1 YecH family metal-binding protein -
  ACET1B_RS11040 (ACET1B_11040) ftnA 2165652..2166149 (-) 498 WP_000917208.1 non-heme ferritin -
  ACET1B_RS11045 (ACET1B_11045) yecR 2166320..2166643 (-) 324 WP_001237869.1 YecR-like lipofamily protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68244.14 Da        Isoelectric Point: 9.3685

>NTDB_id=937679 ACET1B_RS11000 WP_001283425.1 2160158..2161990(+) (uvrC) [Escherichia coli strain UTAK-8]
MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLL
EHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT
EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLD
FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA
ELDVSWDKNHPLLLGVAKGVDRKVGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET
IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=937679 ACET1B_RS11000 WP_001283425.1 2160158..2161990(+) (uvrC) [Escherichia coli strain UTAK-8]
GTGAGTGATCAGTTTGACGCAAAAGCGTTTTTAAAAACCGTAACCAGCCAGCCAGGCGTTTATCGCATGTACGATGCTGG
TGGTACGGTTATCTATGTCGGCAAAGCGAAAGACCTGAAAAAACGGCTTTCCAGCTATTTCCGTAGCAACCTCGCTTCGC
GCAAAACCGAAGCGCTGGTCGCCCAGATCCAGCAAATTGATGTAACGGTTACTCACACAGAAACCGAAGCGCTGTTGCTG
GAACACAACTACATCAAACTCTATCAGCCGCGTTACAACGTTTTGCTACGCGATGATAAATCATATCCTTTTATCTTCCT
GAGTGGTGATACCCACCCGCGTCTGGCGATGCATCGTGGTGCGAAGCATGCCAAAGGTGAATATTTCGGCCCGTTCCCGA
ATGGCTATGCCGTACGTGAAACACTGGCGCTACTGCAAAAGATTTTCCCCATTCGCCAGTGCGAAAATAGTGTTTATCGC
AATCGCTCGCGTCCGTGTCTGCAATACCAGATAGGGCGCTGTCTGGGACCGTGCGTTGAAGGACTGGTGAGTGAAGAAGA
ATACGCTCAGCAGGTCGAGTATGTGCGCCTGTTTTTGTCTGGCAAAGATGATCAGGTGCTTACGCAACTCATTAGTCGTA
TGGAAACTGCCAGCCAGAATCTGGAGTTTGAAGAAGCTGCACGTATTCGCGACCAAATTCAGGCGGTGCGACGCGTCACC
GAAAAACAATTCGTTTCCAATACCGGCGACGACCTCGACGTTATTGGTGTGGCGTTCGATGCGGGCATGGCTTGTGTCCA
CGTATTGTTCATTCGTCAGGGCAAAGTGCTCGGCAGCCGCAGCTATTTCCCGAAAGTGCCTGGCGGTACGGAACTGAGCG
AGGTGGTAGAAACCTTCGTAGGCCAGTTCTATTTACAAGGCAGCCAGATGCGCACCTTACCGGGTGAGATCCTGCTCGAT
TTTAATCTTAGCGATAAAACGCTGCTCGCCGATTCCCTTTCAGAACTGGCGGGACGCAAGATTAATGTTCAAACCAAACC
TCGCGGCGATAGGGCGCGTTATCTGAAACTCGCGCGCACCAATGCGGCGACGGCCTTAACCAGCAAACTTTCGCAGCAAT
CTACCGTTCACCAGCGACTGACCGCGCTTGCCAGCGTGTTGAAATTGCCGGAAGTGAAGCGGATGGAGTGCTTTGACATC
AGCCATACCATGGGCGAACAAACCGTCGCTTCCTGTGTGGTGTTTGATGCTAACGGCCCGCTGCGTGCGGAGTATCGGCG
CTATAACATTACAGGCATCACGCCGGGCGATGATTATGCGGCGATGAATCAGGTGCTGCGTCGGCGTTATGGTAAAGCCA
TTGACGACAGTAAGATCCCGGATGTGATCCTTATCGACGGCGGCAAAGGCCAGCTTGCGCAGGCGAAAAATGTCTTCGCC
GAACTGGATGTCTCATGGGATAAAAATCATCCACTGCTACTTGGCGTTGCCAAAGGAGTAGATCGTAAGGTTGGGCTGGA
AACACTGTTCTTTGAGCCGGAAGGTGAGGGATTCAGTTTGCCGCCAGATTCTCCCGCGCTGCATGTTATCCAGCATATTC
GCGATGAATCACACGATCACGCGATTGGCGGGCACCGTAAAAAACGGGCGAAGGTCAAAAATACCAGCTCCCTGGAAACC
ATTGAAGGCGTCGGGCCAAAACGTCGGCAAATGTTGTTGAAATATATGGGCGGTTTGCAAGGTTTACGTAACGCCAGCGT
CGAGGAAATTGCAAAAGTGCCGGGTATTTCGCAAGGTCTGGCAGAAAAGATCTTCTGGTCGTTGAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-237)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.891

99.508

0.377
  uvrC Streptococcus pneumoniae R6

37.562

99.508

0.374
  uvrC Streptococcus pneumoniae D39

37.562

99.508

0.374