Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLID5_RS11170 Genome accession   NZ_AP025701
Coordinates   2317757..2318248 (-) Length   163 a.a.
NCBI ID   WP_251918775.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2312757..2323248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS11170 (LLID5_21950) comX 2317757..2318248 (-) 492 WP_251918775.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLID5_RS11175 (LLID5_21960) ezrA 2318505..2320235 (-) 1731 WP_251918777.1 septation ring formation regulator EzrA -
  LLID5_RS11180 (LLID5_21970) tsf 2320440..2321468 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LLID5_RS11185 (LLID5_21980) rpsB 2321590..2322357 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19777.60 Da        Isoelectric Point: 5.6118

>NTDB_id=93766 LLID5_RS11170 WP_251918775.1 2317757..2318248(-) (comX) [Lactococcus lactis strain ID-5]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLGEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=93766 LLID5_RS11170 WP_251918775.1 2317757..2318248(-) (comX) [Lactococcus lactis strain ID-5]
ATGACCTATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGCCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGGAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761

Multiple sequence alignment