Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACET1N_RS26190 Genome accession   NZ_CP168984
Coordinates   5170869..5172278 (+) Length   469 a.a.
NCBI ID   WP_024221533.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 5165869..5177278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1N_RS26175 (ACET1N_26175) typA 5166029..5167852 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  ACET1N_RS26180 (ACET1N_26180) glnA 5168225..5169634 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  ACET1N_RS26185 (ACET1N_26185) glnL 5169808..5170857 (+) 1050 WP_097735824.1 nitrogen regulation protein NR(II) -
  ACET1N_RS26190 (ACET1N_26190) luxO 5170869..5172278 (+) 1410 WP_024221533.1 nitrogen regulation protein NR(I) Regulator
  ACET1N_RS26195 (ACET1N_26195) yshB 5172390..5172500 (+) 111 WP_000893994.1 YshB family small membrane protein -
  ACET1N_RS26200 (ACET1N_26200) hemN 5172690..5174063 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  ACET1N_RS26205 (ACET1N_26205) yihI 5174252..5174758 (-) 507 WP_001301646.1 Der GTPase-activating protein YihI -
  ACET1N_RS26210 (ACET1N_26210) - 5174877..5175043 (-) 167 Protein_5122 hypothetical protein -
  ACET1N_RS26215 (ACET1N_26215) yihA 5175340..5175972 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52240.72 Da        Isoelectric Point: 6.4559

>NTDB_id=937474 ACET1N_RS26190 WP_024221533.1 5170869..5172278(+) (luxO) [Escherichia coli strain UTME-3]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVDAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=937474 ACET1N_RS26190 WP_024221533.1 5170869..5172278(+) (luxO) [Escherichia coli strain UTME-3]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAGGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTCGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGTACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCTGCTATCCCGAAGGATTTGATCGAATCCGAACTGTTTGGTCACGAGA
AAGGCGCATTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGATGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTTGAACAGCGGGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCACGCCATTTTTTACAGGTTGCTGCGCGCGAACTGGGCGTAGACGCGAAGTTGCTGCATCCGGAAACCGAAGCTGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACGCTTCTTGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTTGGCT
GGGGCCGTAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

40.086

98.934

0.397
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392