Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   V5F86_RS12515 Genome accession   NZ_CP145137
Coordinates   2476527..2476700 (+) Length   57 a.a.
NCBI ID   WP_338442836.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2471527..2481700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS12500 (V5F86_12505) gcvT 2472323..2473411 (-) 1089 WP_338442834.1 glycine cleavage system aminomethyltransferase GcvT -
  V5F86_RS12505 (V5F86_12510) - 2473853..2475526 (+) 1674 WP_338442835.1 SNF2-related protein -
  V5F86_RS12510 (V5F86_12515) - 2475547..2476341 (+) 795 WP_268392645.1 YqhG family protein -
  V5F86_RS12515 (V5F86_12520) sinI 2476527..2476700 (+) 174 WP_338442836.1 anti-repressor SinI family protein Regulator
  V5F86_RS12520 (V5F86_12525) sinR 2476734..2477069 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  V5F86_RS12525 (V5F86_12530) tasA 2477163..2477948 (-) 786 WP_014114390.1 biofilm matrix protein TasA -
  V5F86_RS12530 (V5F86_12535) - 2478012..2478584 (-) 573 WP_338444517.1 signal peptidase I -
  V5F86_RS12535 (V5F86_12540) tapA 2478568..2479329 (-) 762 WP_338442837.1 amyloid fiber anchoring/assembly protein TapA -
  V5F86_RS12540 (V5F86_12545) - 2479599..2479925 (+) 327 WP_268393880.1 YqzG/YhdC family protein -
  V5F86_RS12545 (V5F86_12550) - 2479967..2480146 (-) 180 WP_003226330.1 YqzE family protein -
  V5F86_RS12550 (V5F86_12555) comGG 2480218..2480592 (-) 375 WP_268393879.1 competence type IV pilus minor pilin ComGG Machinery gene
  V5F86_RS12555 (V5F86_12560) comGF 2480593..2480976 (-) 384 WP_268393878.1 competence type IV pilus minor pilin ComGF Machinery gene
  V5F86_RS12560 (V5F86_12565) comGE 2481002..2481349 (-) 348 WP_268393877.1 competence type IV pilus minor pilin ComGE Machinery gene

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6604.58 Da        Isoelectric Point: 7.3180

>NTDB_id=937417 V5F86_RS12515 WP_338442836.1 2476527..2476700(+) (sinI) [Bacillus spizizenii strain kcgeb_sc]
MKNAKQEHFELDQEWVELMMKAKEANISPEEIQKYLLLNKKSAHPGPAARSHTVNPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=937417 V5F86_RS12515 WP_338442836.1 2476527..2476700(+) (sinI) [Bacillus spizizenii strain kcgeb_sc]
ATGAAAAATGCAAAACAAGAGCACTTCGAATTAGATCAAGAATGGGTTGAATTAATGATGAAAGCCAAAGAGGCAAATAT
CAGCCCGGAAGAAATACAAAAATATTTACTTTTAAACAAAAAGTCTGCTCATCCTGGTCCGGCAGCCAGAAGTCATACCG
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

94.737

100

0.947