Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   V5F86_RS02150 Genome accession   NZ_CP145137
Coordinates   425195..426343 (+) Length   382 a.a.
NCBI ID   WP_338443756.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 420195..431343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS02130 (V5F86_02135) - 420568..421248 (-) 681 WP_268392914.1 ABC transporter ATP-binding protein -
  V5F86_RS02135 (V5F86_02140) - 421264..422730 (-) 1467 WP_338443752.1 ABC transporter permease -
  V5F86_RS02140 (V5F86_02145) yclJ 422942..423625 (+) 684 WP_338443753.1 two-component system response regulator YclJ -
  V5F86_RS02145 (V5F86_02150) yclK 423612..425033 (+) 1422 WP_338443755.1 two-component system sensor histidine kinase YclK -
  V5F86_RS02150 (V5F86_02155) rapC 425195..426343 (+) 1149 WP_338443756.1 response regulator aspartate phosphatase RapC Regulator
  V5F86_RS02155 (V5F86_02160) phrC 426327..426449 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  V5F86_RS02160 (V5F86_02165) - 426549..426656 (-) 108 WP_338443757.1 YjcZ family sporulation protein -
  V5F86_RS02165 (V5F86_02170) - 426809..428173 (-) 1365 WP_088680298.1 aspartate kinase -
  V5F86_RS02170 (V5F86_02175) ceuB 428558..429508 (+) 951 WP_061186190.1 petrobactin ABC transporter permease YclN Machinery gene
  V5F86_RS02175 (V5F86_02180) yclO 429501..430448 (+) 948 WP_268392909.1 petrobactin ABC transporter permease YclO -
  V5F86_RS02180 (V5F86_02185) yclP 430442..431200 (+) 759 WP_014112653.1 petrobactin ABC transporter ATP-binding protein YclP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45720.81 Da        Isoelectric Point: 5.0480

>NTDB_id=937386 V5F86_RS02150 WP_338443756.1 425195..426343(+) (rapC) [Bacillus spizizenii strain kcgeb_sc]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALDMAEAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIINSLPQAYFLITLIYYKRRKHDKASAYHKRGYEYAKETDDADYAIKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=937386 V5F86_RS02150 WP_338443756.1 425195..426343(+) (rapC) [Bacillus spizizenii strain kcgeb_sc]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGCACATTCAGCGT
ACCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCACGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGCCACCAGCTTATGCTTGATTATCTAGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCG
AGTCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGACTGCTTGACTATTATGTGAATTTTTT
TCGCGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTATAAACAGGCGGAGAAAAAGCTTTCCT
TTGTCGCAGATCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCCTATTATTATATGAAGCAAACGTACTTT
TCACTGATCAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGGAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCGATATGGCCG
AAGCAGAACAAAAAGCCCAGCTGGTCGGAAGAGCATATTACAACCTTGGATTATGCTATTACAATCAAGACCTTCTTGAC
CCTGCTATTGACTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCATCAATTCGCTGCCGCAAGCATATTT
TTTAATCACCCTGATTTATTATAAACGGAGAAAACATGATAAAGCTTCGGCATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTACGCGATAAAATTCGAGTTTTTACAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

97.644

100

0.976
  rapF Bacillus subtilis subsp. subtilis str. 168

56.842

99.476

0.565