Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBT43_RS00080 Genome accession   NZ_CP145136
Coordinates   18901..19473 (+) Length   190 a.a.
NCBI ID   WP_060779015.1    Uniprot ID   A0A0X8FFW9
Organism   Aerococcus urinae strain UMB0722     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 13901..24473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT43_RS00060 (DBT43_0000060) - 14506..15495 (-) 990 WP_060779012.1 asparaginase -
  DBT43_RS00065 (DBT43_0000065) - 15527..16945 (-) 1419 WP_060779013.1 AbgT family transporter -
  DBT43_RS00070 (DBT43_0000070) - 16938..18239 (-) 1302 WP_060785028.1 amidohydrolase -
  DBT43_RS00075 (DBT43_0000075) rpsF 18563..18865 (+) 303 WP_013669618.1 30S ribosomal protein S6 -
  DBT43_RS00080 (DBT43_0000080) ssb 18901..19473 (+) 573 WP_060779015.1 single-stranded DNA-binding protein Machinery gene
  DBT43_RS00085 (DBT43_0000085) rpsR 19501..19740 (+) 240 WP_013669454.1 30S ribosomal protein S18 -
  DBT43_RS00090 (DBT43_0000090) - 19986..20195 (+) 210 WP_060779016.1 helix-turn-helix transcriptional regulator -
  DBT43_RS00095 (DBT43_0000095) - 20176..20697 (+) 522 WP_158083606.1 DUF3278 domain-containing protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20886.50 Da        Isoelectric Point: 4.2964

>NTDB_id=937357 DBT43_RS00080 WP_060779015.1 18901..19473(+) (ssb) [Aerococcus urinae strain UMB0722]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=937357 DBT43_RS00080 WP_060779015.1 18901..19473(+) (ssb) [Aerococcus urinae strain UMB0722]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACCGATTTCATCAATTGTGTGATGT
GGCGTAAGGCTGCTGAAAACTTTGCTAAATTCACACGGAAAGGTTCTTTGGTAGGGATTGAAGGGAATATTCAAACCCGT
AATTACGAAAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTTTAGCCAATAACTTTAGCCTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCCAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AACGACCCATTTGCTGGTGGAAATAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8FFW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.368

100

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.187

100

0.489