Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F6I27_RS09170 Genome accession   NZ_CP145134
Coordinates   20503..21075 (+) Length   190 a.a.
NCBI ID   WP_060779015.1    Uniprot ID   A0A0X8FFW9
Organism   Aerococcus tenax strain UMB7049     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 15503..26075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I27_RS09150 (F6I27_0000065) - 16097..17086 (-) 990 WP_111853455.1 asparaginase -
  F6I27_RS09155 (F6I27_0000070) - 17129..18547 (-) 1419 WP_111853456.1 TIGR00366 family protein -
  F6I27_RS09160 (F6I27_0000075) - 18540..19841 (-) 1302 WP_111852473.1 amidohydrolase -
  F6I27_RS09165 (F6I27_0000080) rpsF 20165..20467 (+) 303 WP_013669618.1 30S ribosomal protein S6 -
  F6I27_RS09170 (F6I27_0000085) ssb 20503..21075 (+) 573 WP_060779015.1 single-stranded DNA-binding protein Machinery gene
  F6I27_RS09175 (F6I27_0000090) rpsR 21103..21342 (+) 240 WP_013669454.1 30S ribosomal protein S18 -
  F6I27_RS09180 (F6I27_0000095) - 21563..21772 (+) 210 WP_111852474.1 helix-turn-helix transcriptional regulator -
  F6I27_RS09185 (F6I27_0000100) - 21756..22274 (+) 519 WP_181566128.1 DUF3278 domain-containing protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20886.50 Da        Isoelectric Point: 4.2964

>NTDB_id=937336 F6I27_RS09170 WP_060779015.1 20503..21075(+) (ssb) [Aerococcus tenax strain UMB7049]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=937336 F6I27_RS09170 WP_060779015.1 20503..21075(+) (ssb) [Aerococcus tenax strain UMB7049]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACTCAAACGGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGAAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACCGAAGTCTTAGCGAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AATGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8FFW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.368

100

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.187

100

0.489