Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   R8621_RS05905 Genome accession   NZ_AP028370
Coordinates   1149386..1150252 (-) Length   288 a.a.
NCBI ID   WP_002853827.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10767     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144386..1155252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS05885 (B10767_11610) metF 1146239..1147087 (+) 849 WP_002901235.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R8621_RS05890 (B10767_11620) - 1147109..1147300 (-) 192 WP_002852856.1 membrane protein -
  R8621_RS05895 (B10767_11630) atpB 1147297..1147977 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  R8621_RS05900 (B10767_11640) radA/sms 1148046..1149386 (-) 1341 WP_087700355.1 DNA repair protein RadA Machinery gene
  R8621_RS05905 (B10767_11650) pilA 1149386..1150252 (-) 867 WP_002853827.1 signal recognition particle-docking protein FtsY Machinery gene
  R8621_RS05910 (B10767_11660) - 1150252..1150809 (-) 558 WP_087700357.1 TlpA family protein disulfide reductase -
  R8621_RS05915 (B10767_11670) - 1150892..1151518 (+) 627 WP_002892726.1 5-formyltetrahydrofolate cyclo-ligase -
  R8621_RS05920 (B10767_11680) rny 1151439..1152992 (+) 1554 WP_087700360.1 ribonuclease Y -
  R8621_RS05925 (B10767_11690) - 1153001..1153558 (+) 558 WP_002853883.1 DedA family protein -
  R8621_RS05930 (B10767_11700) - 1153558..1154817 (+) 1260 WP_249624011.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.99 Da        Isoelectric Point: 5.2897

>NTDB_id=93733 R8621_RS05905 WP_002853827.1 1149386..1150252(-) (pilA) [Campylobacter jejuni strain BCH-10767]
MFDFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=93733 R8621_RS05905 WP_002853827.1 1149386..1150252(-) (pilA) [Campylobacter jejuni strain BCH-10767]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAACAAAAAAATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTGTA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment