Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   R8621_RS05900 Genome accession   NZ_AP028370
Coordinates   1148046..1149386 (-) Length   446 a.a.
NCBI ID   WP_087700355.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10767     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1143046..1154386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS05875 (B10767_11590) - 1143183..1143953 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8621_RS05880 (B10767_11600) metE 1143965..1146229 (+) 2265 WP_052795214.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8621_RS05885 (B10767_11610) metF 1146239..1147087 (+) 849 WP_002901235.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R8621_RS05890 (B10767_11620) - 1147109..1147300 (-) 192 WP_002852856.1 membrane protein -
  R8621_RS05895 (B10767_11630) atpB 1147297..1147977 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  R8621_RS05900 (B10767_11640) radA/sms 1148046..1149386 (-) 1341 WP_087700355.1 DNA repair protein RadA Machinery gene
  R8621_RS05905 (B10767_11650) pilA 1149386..1150252 (-) 867 WP_002853827.1 signal recognition particle-docking protein FtsY Machinery gene
  R8621_RS05910 (B10767_11660) - 1150252..1150809 (-) 558 WP_087700357.1 TlpA family protein disulfide reductase -
  R8621_RS05915 (B10767_11670) - 1150892..1151518 (+) 627 WP_002892726.1 5-formyltetrahydrofolate cyclo-ligase -
  R8621_RS05920 (B10767_11680) rny 1151439..1152992 (+) 1554 WP_087700360.1 ribonuclease Y -
  R8621_RS05925 (B10767_11690) - 1153001..1153558 (+) 558 WP_002853883.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49022.94 Da        Isoelectric Point: 6.9288

>NTDB_id=93732 R8621_RS05900 WP_087700355.1 1148046..1149386(-) (radA/sms) [Campylobacter jejuni strain BCH-10767]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFIELKAEQIKVLKELAQVSMKASEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=93732 R8621_RS05900 WP_087700355.1 1148046..1149386(-) (radA/sms) [Campylobacter jejuni strain BCH-10767]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTATAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAG
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTAAGTGGTGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTGCTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATTACTCAAGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453
  radA Streptococcus pneumoniae Rx1

45.682

98.655

0.451
  radA Streptococcus pneumoniae D39

45.682

98.655

0.451
  radA Streptococcus pneumoniae R6

45.682

98.655

0.451
  radA Streptococcus pneumoniae TIGR4

45.682

98.655

0.451
  radA Streptococcus mitis NCTC 12261

45.662

98.206

0.448
  radA Streptococcus mitis SK321

45.662

98.206

0.448

Multiple sequence alignment