Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DBT44_RS00120 | Genome accession | NZ_CP145132 |
| Coordinates | 24869..25441 (+) | Length | 190 a.a. |
| NCBI ID | WP_060779015.1 | Uniprot ID | A0A0X8FFW9 |
| Organism | Aerococcus mictus strain UMB1016 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 14257..35704 | 24869..25441 | within | 0 |
Gene organization within MGE regions
Location: 14257..35704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBT44_RS00055 (DBT44_0000055) | - | 14257..15405 (-) | 1149 | WP_070558817.1 | tyrosine-type recombinase/integrase | - |
| DBT44_RS00060 (DBT44_0000060) | - | 15460..16275 (-) | 816 | WP_070558819.1 | helix-turn-helix transcriptional regulator | - |
| DBT44_RS00065 (DBT44_0000065) | - | 16437..16652 (+) | 216 | WP_070558873.1 | helix-turn-helix transcriptional regulator | - |
| DBT44_RS00070 (DBT44_0000070) | - | 17019..17309 (+) | 291 | WP_070558821.1 | hypothetical protein | - |
| DBT44_RS00075 (DBT44_0000075) | - | 17351..18088 (+) | 738 | WP_070558823.1 | conserved phage C-terminal domain-containing protein | - |
| DBT44_RS00080 (DBT44_0000080) | - | 18150..18578 (+) | 429 | WP_070558824.1 | hypothetical protein | - |
| DBT44_RS00085 (DBT44_0000085) | - | 18581..18832 (+) | 252 | WP_070558826.1 | hypothetical protein | - |
| DBT44_RS00090 (DBT44_0000090) | - | 19105..19533 (+) | 429 | WP_070558828.1 | hypothetical protein | - |
| DBT44_RS00100 (DBT44_0000100) | - | 19953..20942 (-) | 990 | WP_070558830.1 | asparaginase | - |
| DBT44_RS00105 (DBT44_0000105) | - | 20985..22403 (-) | 1419 | WP_070558832.1 | TIGR00366 family protein | - |
| DBT44_RS00110 (DBT44_0000110) | - | 22396..23697 (-) | 1302 | WP_070558834.1 | amidohydrolase | - |
| DBT44_RS00115 (DBT44_0000115) | rpsF | 24531..24833 (+) | 303 | WP_013669618.1 | 30S ribosomal protein S6 | - |
| DBT44_RS00120 (DBT44_0000120) | ssb | 24869..25441 (+) | 573 | WP_060779015.1 | single-stranded DNA-binding protein | Machinery gene |
| DBT44_RS00125 (DBT44_0000125) | rpsR | 25469..25708 (+) | 240 | WP_013669454.1 | 30S ribosomal protein S18 | - |
| DBT44_RS00130 (DBT44_0000130) | - | 25936..26145 (+) | 210 | WP_013669762.1 | helix-turn-helix transcriptional regulator | - |
| DBT44_RS00135 (DBT44_0000135) | - | 26126..26647 (+) | 522 | WP_168163179.1 | DUF3278 domain-containing protein | - |
| DBT44_RS00140 (DBT44_0000140) | - | 29163..31193 (+) | 2031 | WP_070558840.1 | DHH family phosphoesterase | - |
| DBT44_RS00145 (DBT44_0000145) | - | 31318..32028 (+) | 711 | WP_070558841.1 | ATP-binding cassette domain-containing protein | - |
| DBT44_RS00150 (DBT44_0000150) | fetB | 32030..32803 (+) | 774 | WP_070558875.1 | iron export ABC transporter permease subunit FetB | - |
| DBT44_RS00155 (DBT44_0000155) | fetB | 32817..33596 (+) | 780 | WP_070558843.1 | iron export ABC transporter permease subunit FetB | - |
| DBT44_RS00160 (DBT44_0000160) | rplI | 33729..34181 (+) | 453 | WP_060779022.1 | 50S ribosomal protein L9 | - |
| DBT44_RS00165 (DBT44_0000165) | dnaB | 34331..35704 (+) | 1374 | WP_070558845.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 190 a.a. Molecular weight: 20886.50 Da Isoelectric Point: 4.2964
>NTDB_id=937315 DBT44_RS00120 WP_060779015.1 24869..25441(+) (ssb) [Aerococcus mictus strain UMB1016]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQASDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF
Nucleotide
Download Length: 573 bp
>NTDB_id=937315 DBT44_RS00120 WP_060779015.1 24869..25441(+) (ssb) [Aerococcus mictus strain UMB1016]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACAGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGGAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACTGAAGTCTTAGCAAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AATGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACAGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGGAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACTGAAGTCTTAGCAAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGCCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCTAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AATGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.368 |
100 |
0.542 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.187 |
100 |
0.489 |