Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ189_RS00080 Genome accession   NZ_CP145131
Coordinates   19384..19956 (+) Length   190 a.a.
NCBI ID   WP_064292227.1    Uniprot ID   -
Organism   Aerococcus loyolae strain UMB0088     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14384..24956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ189_RS00060 (CJ189_0000060) - 14827..15816 (-) 990 WP_064292745.1 asparaginase -
  CJ189_RS00065 (CJ189_0000065) - 15859..17277 (-) 1419 WP_168162787.1 TIGR00366 family protein -
  CJ189_RS00070 (CJ189_0000070) - 17270..18571 (-) 1302 WP_070598129.1 amidohydrolase -
  CJ189_RS00075 (CJ189_0000075) rpsF 19046..19348 (+) 303 WP_013669618.1 30S ribosomal protein S6 -
  CJ189_RS00080 (CJ189_0000080) ssb 19384..19956 (+) 573 WP_064292227.1 single-stranded DNA-binding protein Machinery gene
  CJ189_RS00085 (CJ189_0000085) rpsR 19984..20223 (+) 240 WP_013669454.1 30S ribosomal protein S18 -
  CJ189_RS00090 (CJ189_0000090) - 20452..20661 (+) 210 WP_013669762.1 helix-turn-helix transcriptional regulator -
  CJ189_RS00095 (CJ189_0000095) - 20645..21163 (+) 519 WP_070598128.1 DUF3278 domain-containing protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20872.48 Da        Isoelectric Point: 4.2964

>NTDB_id=937294 CJ189_RS00080 WP_064292227.1 19384..19956(+) (ssb) [Aerococcus loyolae strain UMB0088]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQGSDNGNNFANPGNNFANDSFGSNQSFGGYNNQQDSPSMNDNSFGGS
NDPFAGGNNNPFPSNDNDGSINIADDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=937294 CJ189_RS00080 WP_064292227.1 19384..19956(+) (ssb) [Aerococcus loyolae strain UMB0088]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGGGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACAGATTTCATCAATTGTGTGATGT
GGCGTAAAGCTGCTGAAAACTTTGCTAAATTTACACGGAAAGGTTCTTTGGTAGGGATTGAAGGCAATATTCAAACCCGT
AACTACGAAAACCAACAAGGCCAACGTGTTTATGTGACTGAAGTCTTAGCAAATAACTTTAGCTTACTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGGCAGTGACAATGGCAATAACTTTGCCAACCCAGGCAATAATTTTGCGAATGACTCTT
TTGGCTCTAATCAAAGCTTTGGCGGCTATAATAATCAACAAGATTCCCCTTCAATGAATGATAACAGCTTTGGTGGATCC
AACGACCCATTTGCTGGTGGAAACAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.404

100

0.553
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.705

100

0.495