Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6C12_RS00040 Genome accession   NZ_CP145114
Coordinates   9640..10206 (+) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain N23-3408     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4640..15206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C12_RS00030 (V6C12_00030) gyrA 6617..9118 (+) 2502 WP_002361457.1 DNA gyrase subunit A -
  V6C12_RS00035 (V6C12_00035) rpsF 9293..9595 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  V6C12_RS00040 (V6C12_00040) ssb 9640..10206 (+) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  V6C12_RS00045 (V6C12_00045) rpsR 10232..10471 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  V6C12_RS00050 (V6C12_00050) - 10628..12652 (+) 2025 WP_002363542.1 DHH family phosphoesterase -
  V6C12_RS00055 (V6C12_00055) rplI 12658..13110 (+) 453 WP_002356023.1 50S ribosomal protein L9 -
  V6C12_RS00060 (V6C12_00060) dnaB 13384..14751 (+) 1368 WP_002381331.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=937258 V6C12_RS00040 WP_002364599.1 9640..10206(+) (ssb) [Enterococcus faecalis strain N23-3408]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=937258 V6C12_RS00040 WP_002364599.1 9640..10206(+) (ssb) [Enterococcus faecalis strain N23-3408]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AATTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543