Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G15_RS11470 Genome accession   NZ_CP145090
Coordinates   2185243..2185686 (-) Length   147 a.a.
NCBI ID   WP_353433467.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_A_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2180243..2190686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G15_RS11445 (V5G15_11480) - 2180955..2181089 (+) 135 WP_353433479.1 hypothetical protein -
  V5G15_RS11450 (V5G15_11485) - 2181146..2181925 (-) 780 Protein_2218 opacity family porin -
  V5G15_RS11455 (V5G15_11490) - 2182489..2182869 (-) 381 Protein_2219 pilin -
  V5G15_RS11460 (V5G15_11495) lpxC 2183015..2183938 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G15_RS11465 (V5G15_11505) - 2184652..2185044 (-) 393 Protein_2221 pilin -
  V5G15_RS11470 (V5G15_11510) pilE 2185243..2185686 (-) 444 WP_353433467.1 pilin Machinery gene
  V5G15_RS11475 (V5G15_11515) - 2185781..2186185 (-) 405 Protein_2223 pilin -
  V5G15_RS11480 (V5G15_11520) pilE 2186297..2186584 (-) 288 WP_353433468.1 pilin Machinery gene
  V5G15_RS11485 (V5G15_11525) - 2186623..2187042 (-) 420 Protein_2225 pilin -
  V5G15_RS11490 (V5G15_11530) - 2187577..2187930 (-) 354 Protein_2226 pilin -
  V5G15_RS11495 (V5G15_11535) - 2187896..2188349 (-) 454 Protein_2227 pilin -
  V5G15_RS11500 (V5G15_11540) - 2188839..2189231 (-) 393 Protein_2228 pilin -
  V5G15_RS11505 (V5G15_11545) - 2189499..2189870 (-) 372 Protein_2229 pilin -
  V5G15_RS11510 (V5G15_11550) - 2189911..2190261 (-) 351 Protein_2230 pilin -
  V5G15_RS11515 (V5G15_11555) - 2190314..2190646 (-) 333 Protein_2231 pilin -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15968.87 Da        Isoelectric Point: 8.8559

>NTDB_id=937205 V5G15_RS11470 WP_353433467.1 2185243..2185686(-) (pilE) [Neisseria gonorrhoeae strain WHO_A_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTGYYLNHGIWPEDNTSAGVASASDIKGKYVESVTVENGVVTAQMASTGVNKEIQ
GKRLSLWAKRENGSVKWFCGRPVKRAAGNAGNADDVTDNKKIDTKLEKPFYPISFRADRPGFPPARE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=937205 V5G15_RS11470 WP_353433467.1 2185243..2185686(-) (pilE) [Neisseria gonorrhoeae strain WHO_A_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGGGTATTACCTGAATCACGGCATATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCGCCTCCGACATCAAAGGCA
AATATGTTGAAAGCGTTACGGTCGAAAACGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCGCCGC
CGGCAACGCCGGCAACGCCGACGACGTCACCGACAACAAGAAAATCGACACCAAACTAGAGAAACCTTTTTACCCGATAA
GTTTCCGTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.866

86.395

0.612
  pilE Neisseria gonorrhoeae MS11

66.142

86.395

0.571