Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLL8_RS11560 Genome accession   NZ_AP025700
Coordinates   2320407..2320898 (-) Length   163 a.a.
NCBI ID   WP_251899979.1    Uniprot ID   -
Organism   Lactococcus lactis strain L8     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2315407..2325898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLL8_RS11560 (LLL8_22610) comX 2320407..2320898 (-) 492 WP_251899979.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLL8_RS11565 (LLL8_22620) ezrA 2321155..2322885 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  LLL8_RS11570 (LLL8_22630) tsf 2323090..2324118 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LLL8_RS11575 (LLL8_22640) rpsB 2324240..2325007 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19832.68 Da        Isoelectric Point: 5.6118

>NTDB_id=93718 LLL8_RS11560 WP_251899979.1 2320407..2320898(-) (comX) [Lactococcus lactis strain L8]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQNDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVIFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=93718 LLL8_RS11560 WP_251899979.1 2320407..2320898(-) (comX) [Lactococcus lactis strain L8]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
ACGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGATCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

75.46

100

0.755

Multiple sequence alignment