Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G09_RS11030 Genome accession   NZ_CP145088
Coordinates   2108715..2109131 (-) Length   138 a.a.
NCBI ID   WP_353424273.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_B_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103715..2114131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G09_RS11010 (V5G09_11045) - 2103720..2104202 (+) 483 WP_003694396.1 CinA family protein -
  V5G09_RS11015 (V5G09_11050) msrAB 2104286..2105854 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  V5G09_RS11020 (V5G09_11055) pilA 2106000..2107253 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G09_RS11025 (V5G09_11060) - 2107521..2108303 (-) 783 WP_353424431.1 opacity family porin -
  V5G09_RS11030 (V5G09_11065) pilE 2108715..2109131 (-) 417 WP_353424273.1 pilin Machinery gene
  V5G09_RS11035 (V5G09_11070) lpxC 2109237..2110160 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G09_RS11040 (V5G09_11080) - 2110662..2111219 (-) 558 WP_353424274.1 pilin -
  V5G09_RS11045 (V5G09_11085) - 2111549..2111740 (+) 192 WP_154235615.1 hypothetical protein -
  V5G09_RS11050 (V5G09_11090) - 2111804..2112493 (-) 690 WP_003705080.1 SprT family zinc-dependent metalloprotease -
  V5G09_RS11055 (V5G09_11095) - 2112490..2113233 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5G09_RS11060 (V5G09_11100) gmhB 2113262..2113825 (-) 564 WP_003705078.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14854.48 Da        Isoelectric Point: 7.1352

>NTDB_id=937159 V5G09_RS11030 WP_353424273.1 2108715..2109131(-) (pilE) [Neisseria gonorrhoeae strain WHO_B_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNGAAGVASASEIKGKYVQKVEVKKGVVTATMASSNVNKEIQ
GKKLSLWGRRENGSVKWFCGQPVTRTGDNDDTVADAAGNDKIETKHLPSTCRDTSSAT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=937159 V5G09_RS11030 WP_353424273.1 2108715..2109131(-) (pilE) [Neisseria gonorrhoeae strain WHO_B_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCAAATGGCCGGAAGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCAAAAAAGGCGTCGTCACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGG
CGACAACGACGACACCGTTGCCGACGCCGCCGGCAACGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATA
CGTCATCTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

77.698

100

0.783
  pilE Neisseria gonorrhoeae MS11

73.188

100

0.732