Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   V5G09_RS08040 Genome accession   NZ_CP145088
Coordinates   1566445..1567089 (-) Length   214 a.a.
NCBI ID   WP_003689466.1    Uniprot ID   Q5F6K3
Organism   Neisseria gonorrhoeae strain WHO_B_2024     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1561445..1572089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G09_RS08005 (V5G09_08020) ftsL 1561926..1562189 (-) 264 WP_003689461.1 cell division protein FtsL -
  V5G09_RS08010 (V5G09_08025) rsmH 1562216..1563172 (-) 957 WP_003697441.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  V5G09_RS08015 (V5G09_08030) mraZ 1563169..1563624 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  V5G09_RS08020 (V5G09_08035) - 1563903..1565150 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  V5G09_RS08035 (V5G09_08050) - 1565591..1566412 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  V5G09_RS08040 (V5G09_08055) dsbA1 1566445..1567089 (-) 645 WP_003689466.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  V5G09_RS08045 (V5G09_08060) ftsN 1567092..1567955 (-) 864 WP_010360712.1 cell division protein FtsN -
  V5G09_RS08050 (V5G09_08065) comM 1568061..1569557 (-) 1497 WP_003697442.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V5G09_RS08055 (V5G09_08070) - 1569571..1569891 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  V5G09_RS08060 (V5G09_08075) putP 1570379..1571905 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24003.07 Da        Isoelectric Point: 9.9225

>NTDB_id=937146 V5G09_RS08040 WP_003689466.1 1566445..1567089(-) (dsbA1) [Neisseria gonorrhoeae strain WHO_B_2024]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAVALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=937146 V5G09_RS08040 WP_003689466.1 1566445..1567089(-) (dsbA1) [Neisseria gonorrhoeae strain WHO_B_2024]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F6K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

52.688

86.916

0.458