Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   V5G10_RS05785 Genome accession   NZ_CP145086
Coordinates   1098686..1099081 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_C_2024     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1097626..1105878 1098686..1099081 within 0


Gene organization within MGE regions


Location: 1097626..1105878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G10_RS05780 (V5G10_05780) comP 1098149..1098598 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  V5G10_RS05785 (V5G10_05785) comE 1098686..1099081 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  V5G10_RS05790 (V5G10_05790) - 1099183..1099302 (-) 120 Protein_1136 competence protein ComE -
  V5G10_RS05820 (V5G10_05820) - 1104926..1105579 (-) 654 Protein_1137 TIGR01621 family pseudouridine synthase -
  V5G10_RS05825 (V5G10_05825) - 1105639..1105878 (-) 240 WP_229684458.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=937094 V5G10_RS05785 WP_003703428.1 1098686..1099081(-) (comE) [Neisseria gonorrhoeae strain WHO_C_2024]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=937094 V5G10_RS05785 WP_003703428.1 1098686..1099081(-) (comE) [Neisseria gonorrhoeae strain WHO_C_2024]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1