Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G01_RS10895 Genome accession   NZ_CP145083
Coordinates   2069444..2069761 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064444..2074761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS10860 (V5G01_10905) - 2064590..2064820 (-) 231 WP_003694609.1 hypothetical protein -
  V5G01_RS10865 (V5G01_10910) - 2065047..2065247 (-) 201 WP_002212530.1 hypothetical protein -
  V5G01_RS10870 (V5G01_10915) - 2065251..2065562 (-) 312 WP_003694611.1 hypothetical protein -
  V5G01_RS10875 (V5G01_10920) - 2065574..2066788 (-) 1215 WP_003694614.1 replication initiation factor domain-containing protein -
  V5G01_RS10880 (V5G01_10925) - 2067490..2067810 (-) 321 Protein_2104 pilin -
  V5G01_RS10885 (V5G01_10930) - 2067871..2068254 (-) 384 Protein_2105 pilin -
  V5G01_RS10890 (V5G01_10935) - 2068798..2069520 (-) 723 WP_353428703.1 pilin -
  V5G01_RS10895 (V5G01_10940) pilE 2069444..2069761 (-) 318 WP_003697861.1 pilin Machinery gene
  V5G01_RS10900 (V5G01_10945) - 2070133..2070264 (-) 132 WP_012504086.1 hypothetical protein -
  V5G01_RS10905 (V5G01_10950) - 2070346..2071035 (-) 690 WP_003687013.1 SprT family zinc-dependent metalloprotease -
  V5G01_RS10910 (V5G01_10955) - 2071032..2071775 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5G01_RS10915 (V5G01_10960) gmhB 2071805..2072368 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  V5G01_RS10920 (V5G01_10965) - 2072511..2074163 (+) 1653 WP_064662142.1 LTA synthase family protein -
  V5G01_RS10925 (V5G01_10970) - 2074230..2074745 (-) 516 WP_228369792.1 glycosyltransferase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=937065 V5G01_RS10895 WP_003697861.1 2069444..2069761(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=937065 V5G01_RS10895 WP_003697861.1 2069444..2069761(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41