Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G01_RS10680 Genome accession   NZ_CP145083
Coordinates   2031384..2031767 (-) Length   127 a.a.
NCBI ID   WP_284445949.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2026384..2036767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS10660 (V5G01_10705) - 2026571..2027512 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  V5G01_RS10665 (V5G01_10710) - 2027521..2028396 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  V5G01_RS10675 (V5G01_10720) thiC 2028994..2030895 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  V5G01_RS10680 (V5G01_10725) pilE 2031384..2031767 (-) 384 WP_284445949.1 pilin Machinery gene
  V5G01_RS10685 (V5G01_10730) - 2032119..2032517 (-) 399 Protein_2065 pilin -
  V5G01_RS10690 (V5G01_10735) - 2032679..2033032 (-) 354 Protein_2066 pilin -
  V5G01_RS10695 (V5G01_10740) - 2033072..2033458 (-) 387 Protein_2067 pilin -
  V5G01_RS10700 (V5G01_10745) - 2033846..2034295 (-) 450 Protein_2068 pilin -
  V5G01_RS10705 (V5G01_10750) - 2034787..2035148 (-) 362 Protein_2069 pilin -
  V5G01_RS10710 (V5G01_10755) - 2035175..2035504 (-) 330 Protein_2070 pilin -
  V5G01_RS10715 (V5G01_10760) - 2035508..2035816 (+) 309 Protein_2071 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13705.54 Da        Isoelectric Point: 9.9779

>NTDB_id=937061 V5G01_RS10680 WP_284445949.1 2031384..2031767(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
MPAGILKHRPKKSAVAGYCPNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARR
ENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDKASDAK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=937061 V5G01_RS10680 WP_284445949.1 2031384..2031767(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
TTGCCCGCCGGAATATTAAAACACCGCCCAAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATGGCCGGA
AAACAACACTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACG
GCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGT
GAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGACGACGACACCGTTGCCGACGCCAAAGACGG
CAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

89.516

97.638

0.874
  pilE Neisseria gonorrhoeae strain FA1090

68.293

96.85

0.661