Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G00_RS11010 Genome accession   NZ_CP145080
Coordinates   2103340..2103675 (-) Length   111 a.a.
NCBI ID   WP_115179204.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_E_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098340..2108675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G00_RS10975 (V5G00_11010) - 2098710..2099093 (-) 384 Protein_2123 pilin -
  V5G00_RS10980 (V5G00_11015) lpxC 2099238..2100161 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G00_RS10985 (V5G00_11025) - 2100663..2100974 (-) 312 Protein_2125 pilin -
  V5G00_RS10990 (V5G00_11030) - 2101012..2101413 (-) 402 Protein_2126 pilin -
  V5G00_RS10995 (V5G00_11035) - 2101715..2102160 (-) 446 Protein_2127 pilin -
  V5G00_RS11000 (V5G00_11040) - 2102260..2102700 (-) 441 Protein_2128 pilin -
  V5G00_RS11005 (V5G00_11045) - 2102800..2103240 (-) 441 Protein_2129 pilin -
  V5G00_RS11010 (V5G00_11050) pilE 2103340..2103675 (-) 336 WP_115179204.1 pilin Machinery gene
  V5G00_RS11015 (V5G00_11055) - 2103714..2104079 (-) 366 Protein_2131 pilin -
  V5G00_RS11020 (V5G00_11060) - 2104106..2104471 (-) 366 Protein_2132 pilin -
  V5G00_RS11025 (V5G00_11065) - 2105212..2105337 (+) 126 Protein_2133 IS110 family transposase -
  V5G00_RS11030 (V5G00_11070) - 2105675..2105806 (-) 132 WP_010356054.1 hypothetical protein -
  V5G00_RS11035 (V5G00_11075) - 2105888..2106576 (-) 689 Protein_2135 SprT family zinc-dependent metalloprotease -
  V5G00_RS11040 (V5G00_11080) - 2106573..2107316 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5G00_RS11045 (V5G00_11085) gmhB 2107346..2107909 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11937.48 Da        Isoelectric Point: 9.1785

>NTDB_id=937016 V5G00_RS11010 WP_115179204.1 2103340..2103675(-) (pilE) [Neisseria gonorrhoeae strain WHO_E_2024]
MASSDKIKGKYVQSVTVAKGVVTAQMASTGVNKEIKDKRLSLWAKREDGSVKWFCGQPVKRDDTAAKAGTDDVAKDGNGN
EIETKHLPSTCRDASSAVCIETPPTAFYKNT

Nucleotide


Download         Length: 336 bp        

>NTDB_id=937016 V5G00_RS11010 WP_115179204.1 2103340..2103675(-) (pilE) [Neisseria gonorrhoeae strain WHO_E_2024]
GTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCGACGACACCGCCGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGGCAACGGCAAC
GAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACGCTTCATCTGCCGTTTGCATAGAAACACCACCTACGGCTTT
CTATAAAAATACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.165

87.387

0.631
  pilE Neisseria gonorrhoeae MS11

64.444

81.081

0.523